Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00296 ATGATGAAGCACCAAAACCTCATGGGGATCAAAACAGAAATGTTGAAGAACCCTATTAGGGTTAGTCTTAGCTTCATGCTCCTCCTTTTCATCACAACAAGTGCTCAAGCACCAATTTACATGAACAGTTTTTGTGACAACTCAACACTTGTTAGTTCTTCATACAAAGCCAACGTTGATACCCTTTTCTCATGGCTAACCACAGACTCATACGAAAGCGATGGATACAACTACACCTCTGTAAATAGCAACAACCACAACAATGATGATGCTGTTTATAGATTGTACAGTTGCAGATACGACATCACAGGGTATTTTTGCAAGTTCTGCATCACCACTGCTGCGAATGAACTCTCTCGAAGGTGTTCCAACAGTGTAGGAGCTATCATATGGTATGACATATGCATCATCCGTTACACAAACCAAAGCTTCAGTGGCAAAGTTAGTTTATCGCCAATATGGAATACTACCGGAACCAGAAAAATCAAGGACTCATCAGAAGTTAAGAAAACTGAGGATTCTATGGAGAGTTTGATTAGAAAAGCAACGGTGGAGACGAAGAAGTTTTGGGCAGTGGAAGAGTTTGATTGGGTTGAGAATGAGAAAAGATATGGTTGGGTGCAGTGTGACAGAGGTATTAAAAATGATCAGTGTGGTGAGTGTTTGCATGCATTGTTAGACATTTTTCCACAGTGTTGTTCTACAAATGTACAGTGGGCAATTTTTGGTCCAAGTTGTAGCATCAGGATGGATGATCAAAATCTCTACCCGAATTCAGATGCGATGATGTTTGATGAGGAATCATTGAATGGAGATCTACCTACAATCCCATTAACCGAAGTTCTACATTGTACTAATAACTTTTCAGAAGCATCTAAGTTAGGGGAAGGTGGATTTGGCCCTGTTTACAAGGGAATTCTACCAGATGGAAGACAAATCGCAGTGAAAAGGCTCTCACAATTTTCTGGTCAGGGCTCACAGGAGTTCAAAAATGAAGTAATGTTTATAGCCAAATTGCAACATCGTAACCTTGTGAGACTTTTGGGGTGCTGTTTGGAGGAAAATGAGAAGATGCTTGTATATGAGTATATGTGTAATGCAAGCCTTGACTCTCACCTCTTTGGTGATGAAGAGAAGAGAAAGCAACTTGATTGGAAACTAAGATTAAGCATTATCAATGGAATAGCAAAAGGTATTTTATATCTTCACGAGGACTCTCGACTCAGAGTAATTCATAGAGATCTCAAAGCTAGCAATGTTCTATTAGACAGTGAGATGAATCCCAAGATATCAGATTTTGGATTGGCCAGGGCATTTGAAATAGGACAGAACCAAGCAAAGACTAAACGAGTAGTGGGCACCTATGGATACATGGCTCCAGAGTATGCTATGGAAGGATTATTTTCCGTGAAATCAGATGTTTTCAGCTTTGGAGTTATTGTGCTAGAAATCATTTGTGGAAGAAAGAACAGTGGATTCCATCTATCAGAACATGGTCAAAGTCTTCTTTTATATGCTTGGAACATATGGAGTGGAGGAAATTGTTTGGAATTGATGGACACAGCACTGATAAAATCCTTCATAGCCAGTGAAGTTGTCAAGTGCTTACACGTTGGTTTGCTTTGTGTTCAACAAGATTTAGCAGATAGACCAACCATGTCTAAGGTTGTTCTAATGCTAGGAAGTGACACAATGGCCCTTCCAAAACCCAACCACCCTGCATTTTCTGTTGGAAAATTGACCTCTAAAGAAAAATCAACTTTAAGAAGTTCCAAGAATCTTTCTATTAATGATGTAACATTCTCAAGCGTTTTAGCAAGATAA 1824 0.3931 MMKHQNLMGIKTEMLKNPIRVSLSFMLLLFITTSAQAPIYMNSFCDNSTLVSSSYKANVDTLFSWLTTDSYESDGYNYTSVNSNNHNNDDAVYRLYSCRYDITGYFCKFCITTAANELSRRCSNSVGAIIWYDICIIRYTNQSFSGKVSLSPIWNTTGTRKIKDSSEVKKTEDSMESLIRKATVETKKFWAVEEFDWVENEKRYGWVQCDRGIKNDQCGECLHALLDIFPQCCSTNVQWAIFGPSCSIRMDDQNLYPNSDAMMFDEESLNGDLPTIPLTEVLHCTNNFSEASKLGEGGFGPVYKGILPDGRQIAVKRLSQFSGQGSQEFKNEVMFIAKLQHRNLVRLLGCCLEENEKMLVYEYMCNASLDSHLFGDEEKRKQLDWKLRLSIINGIAKGILYLHEDSRLRVIHRDLKASNVLLDSEMNPKISDFGLARAFEIGQNQAKTKRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVIVLEIICGRKNSGFHLSEHGQSLLLYAWNIWSGGNCLELMDTALIKSFIASEVVKCLHVGLLCVQQDLADRPTMSKVVLMLGSDTMALPKPNHPAFSVGKLTSKEKSTLRSSKNLSINDVTFSSVLAR 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00296 607 ProSiteProfiles Gnk2-homologous domain profile. 36 144 IPR002902 -
Viun11g00296 607 SUPERFAMILY Protein kinase-like (PK-like) 272 560 IPR011009 -
Viun11g00296 607 Gene3D Transferase(Phosphotransferase) domain 1 364 568 - -
Viun11g00296 607 Pfam Salt stress response/antifungal 169 252 IPR002902 -
Viun11g00296 607 Pfam Salt stress response/antifungal 51 141 IPR002902 -
Viun11g00296 607 Gene3D - 151 253 IPR038408 -
Viun11g00296 607 Gene3D - 38 144 IPR038408 -
Viun11g00296 607 SMART serkin_6 288 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00296 607 ProSiteProfiles Protein kinase domain profile. 288 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00296 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Viun11g00296 607 Pfam Protein tyrosine and serine/threonine kinase 292 557 IPR001245 GO:0004672|GO:0006468
Viun11g00296 607 FunFam Liguleless narrow1 364 568 - -
Viun11g00296 607 ProSiteProfiles Gnk2-homologous domain profile. 150 255 IPR002902 -
Viun11g00296 607 CDD STKc_IRAK 294 560 - -
Viun11g00296 607 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 253 363 - -
Viun11g00296 607 Gene3D Phosphorylase Kinase; domain 1 254 363 - -
Viun11g00296 607 Pfam Domain of unknown function (DUF3403) 562 607 IPR021820 GO:0004674
Viun11g00296 607 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 215 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00296 Viun-Chr11 2554380 2557512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00296 33 575 Receptor kinase-like Gene Family AT4G38830 38.141 1.11e-134 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun11g00296 PK_Tyr_Ser-Thr 6.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00296 - - var:108339138 1063.52