Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00281 ATGAGAAGTTTGATCAGAAAAGCCACTGTGGAGACCAACCAGTTGTACTATATGGATGGCTTCAATTTGAGTTCCACTCAGAGAAGGTATGGCTTGGTTCAATGCAGTAGAGATCTCACAAGTGAAGGGTGCAGAGAGTGTTTGGAGACCATGTTAGCAAAAGTTCCCAAATGCTGTGAGCATAAATTGGGGTGGCAAGTTTCCACTGCAAGTTGTCTCATAAAGTATGATGACTACATTTTCTACCTTTTTCACAATCCAGCATCTCCTGTTCCTGTGCCTGATACTCAAATAGCCAAAGAAAGGGGTGGTGGTAAGGCAAAACTATTGATCATTGGCTTAAGCGTGCTGGGCGCAGTAGCTTTGCTATGTTTCAGTGTTTATTGCTTCTGGTTCAGAAAAAGAACTAGGAGTGGAAGAAAAACTGGTGGGCGTCTTCCTGAGACCATTCGTCTATCATCATATCACAATGTTCAAACTGAGGAAACACTGAATCCAGATATCTCTACAATCCCATTAATCACAATTCTAGAAAGTACTGATAACTTTTCAGAAGCATCTAAGCTGGGGGAAGGTGGATTCGGCCCCGTTTACAAGGGAGTTCTACCAGATGGAAGACAAATTGCAGTGAAAAGACTCTCAGAAACTTCTGGTCAAGGGTCAGAAGAGTTCAAGAATGAAGTAACGTTTATAGCTAAATTGCAACACCGCAACCTTGTAAGACTTTTAGCATGCTGCTTGGAGGACAAAGAGAAGATACTTGTATATGAGTATATGACAAATTCAAGTCTCGACTTTCACCTCTTTGATGAGAGAAAGAAAAGACAGCTGGATTGGCAAATAAGATTAAGCATTATACATGGCATAGCAAAAGGACTTTTATACCTTCACGAGGATTCTAGACTCAAAGTTATTCACAGAGATCTCAAAGCTAGCAATGTTTTATTAGATGATGAAATGAATCCTAAAATATCAGATTTTGGATTGGCAAGATCATTTGAGAAAGGCCAGAACCAAGCAAATACCAGACGAGTAATGGGGACATATGGATACATGGCTCCAGAGTACGCTATGGAAGGATTGTTTTCGGTGAAATCTGATGTTTTCAGCTATGGAGTTCTTGTTCTGGAAATCATATGTGGGAAAAAGAACAGTGGATTCTATCTATCAGAATGTGGTCAAAGTCTTACATTATATGCTTGGAAAGTTTGGTGTGAAGGAAAGTGTTTGGAACTAATGGATCCAGTGTTGGAGGAAAGTTGTGTGGAGAGTGAAGTTGCGAAGTGCATGCACATTGGTCTGTTATGTGTTCAAGAAGATGCAGCAGATAGACCAACAATGTCCACTGTTGTTGTAATGCTAGCAAGTGACATGATGTCTCTTCCAAAACCTAACCAACCGGCATTTTCAGTAGGAAGAATGACCTTAGATGACACATCTACTTCAAAAAGTTCCAAGAATCTTTCCATTAATGATGTAACTGTCTCTAACATTTTTCCAAGGTGA 1506 0.4011 MRSLIRKATVETNQLYYMDGFNLSSTQRRYGLVQCSRDLTSEGCRECLETMLAKVPKCCEHKLGWQVSTASCLIKYDDYIFYLFHNPASPVPVPDTQIAKERGGGKAKLLIIGLSVLGAVALLCFSVYCFWFRKRTRSGRKTGGRLPETIRLSSYHNVQTEETLNPDISTIPLITILESTDNFSEASKLGEGGFGPVYKGVLPDGRQIAVKRLSETSGQGSEEFKNEVTFIAKLQHRNLVRLLACCLEDKEKILVYEYMTNSSLDFHLFDERKKRQLDWQIRLSIIHGIAKGLLYLHEDSRLKVIHRDLKASNVLLDDEMNPKISDFGLARSFEKGQNQANTRRVMGTYGYMAPEYAMEGLFSVKSDVFSYGVLVLEIICGKKNSGFYLSECGQSLTLYAWKVWCEGKCLELMDPVLEESCVESEVAKCMHIGLLCVQEDAADRPTMSTVVVMLASDMMSLPKPNQPAFSVGRMTLDDTSTSKSSKNLSINDVTVSNIFPR 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00281 501 FunFam Cysteine-rich receptor-like protein kinase 10 1 81 - -
Viun11g00281 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Viun11g00281 501 CDD STKc_IRAK 189 454 - -
Viun11g00281 501 Gene3D - 1 81 IPR038408 -
Viun11g00281 501 Pfam Protein tyrosine and serine/threonine kinase 186 453 IPR001245 GO:0004672|GO:0006468
Viun11g00281 501 SUPERFAMILY Protein kinase-like (PK-like) 169 487 IPR011009 -
Viun11g00281 501 Pfam Salt stress response/antifungal 23 79 IPR002902 -
Viun11g00281 501 Pfam Domain of unknown function (DUF3403) 456 501 IPR021820 GO:0004674
Viun11g00281 501 Gene3D Transferase(Phosphotransferase) domain 1 259 464 - -
Viun11g00281 501 SMART serkin_6 183 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00281 501 ProSiteProfiles Gnk2-homologous domain profile. 1 81 IPR002902 -
Viun11g00281 501 Gene3D Phosphorylase Kinase; domain 1 147 258 - -
Viun11g00281 501 FunFam Liguleless narrow1 259 462 - -
Viun11g00281 501 ProSiteProfiles Protein kinase domain profile. 183 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00281 501 FunFam Cysteine-rich receptor-like protein kinase 10 148 258 - -
Viun11g00281 501 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 6 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00281 Viun-Chr11 2390129 2393294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00281 22 501 Receptor kinase-like Gene Family AT4G05200 46.092 2.78e-148 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun11g00281 PK_Tyr_Ser-Thr 6.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00281 - - gmx:100796972 864.759