Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00269 ATGGCCTCTTCAAATTCACCATGTGCAGCATGCAAGTTCTTGCGTCGCAAATGCCAACCCGAGTGTGCTTTTGCACCCTATTTCCCTCCCGACCAACCTCAGAAGTTCGCAAATGTTCATAGAATTTTCGGAGCCAGCAATGTCACCAAGCTTCTCAACGATTTGCACCCTCACCAACGTGAAGATGCCGTGAATTCCCTTGCTTATGAAGCTGAGATGAGACTCCGTGATCCTGTCTATGGCTGTGTCGGAGTCATATCACTGTTACAGCACCAACTTCGCCAGCTTCAAATGGATCTCTACTGCGCCAAATCTGAACTCTCCAGGTACCAAAACCTAAGCACCATCACCACCAACCACACCCTCATGGCGTCTGAATCCGCCGCCGCCTTCCACCACCACCACCACCAGAACAACAACACCACCACCACCACCAATACCTTCGGCCGTGACCACCACTACCACTTCCACCACCACCAGTTTTTCCCCAGAGACCACCAACACCAACAAGTGGCGAGAACCTTCGACGGAGGCAACAACTACGACGCAAGCCTCTTGGCCATGAACATATCTGCCAGCTTAGGGCAACTGAACCAGCTTCAGCATCAGAGCGCCGCTGGCGGCGGCGATGACCGCCACACCGCCAACCGCTCCTAG 657 0.5373 MASSNSPCAACKFLRRKCQPECAFAPYFPPDQPQKFANVHRIFGASNVTKLLNDLHPHQREDAVNSLAYEAEMRLRDPVYGCVGVISLLQHQLRQLQMDLYCAKSELSRYQNLSTITTNHTLMASESAAAFHHHHHQNNNTTTTTNTFGRDHHYHFHHHQFFPRDHQHQQVARTFDGGNNYDASLLAMNISASLGQLNQLQHQSAAGGGDDRHTANRS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00269 218 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Viun11g00269 218 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Viun11g00269 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00269 Viun-Chr11 2276661 2277682 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00269 2 218 AS2 family AT1G65620 59.447 2.49e-79 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun11g00269 LOB 3.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00269 - - gmx:100806890 350.132