Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00232 ATGGTGTTCTTATCTTCCTTTTGGTGCTCTGCACAATCAGTGATTGCCCGTGTGGCTATCATTATTGTGCTATTTCAGCAAACACACGGTGCTCAGGATCATCCATTCTGTGCTCCTTCTTCGTGTGGAAAAATTCGCAACATAACATATCCTTTCCGACTCAAAGGCGATTCACCTGGTTGCGGCCTTGCAAGGTACGAATTAGATTGCGTGAAGAATGTGACAGTGTTCACCTTGTTTTCAGGGAAATACCATGTGCAGAATATCGATTACGAGACATACAAAATCCAATTAACTGATGCAGGTGTTGTGGAGGACACTGTTTGCTCCATTCCTCGCTATTTCTTGTTTTCAAAGAGCTTCACTTACATTGGGGGTCCTGACAATTACGCCACTGATCCACTAACTTTCTGGAATGGGGATGGGGTTTCTAGTTTTCCTCCGTATGTAGCGTTTCTAAACTGCTCTGATCCAGTGACTGATGATACTCGATACGTGGAAGTGAATGGCACGCTTTGTGATTCTGGAGGCCATGTCTATGCTGTTCTTTATTCCAACCATGGTGAATTCAAAACGATGGACATCAAGGTTGGGTGCCGTTTAATGGTTGCTACTTTTGCAAATTGGAACAATGGCAACAACGTTTCCGTTTCCTATGTTGATATCCACGAGTGGCTGCATAATGGGTTTTGGTTGTCTTGGGCACTAGTTAAGTGTATAGATCAATGTGGAAAGGGTGTGGGATGCTTCATCAATCAAACTACACATAGAATCGGATGTTATCAGAACTACTGCCATGTTATGCAGTTTGACTTTGGAAAAGGAAAGTGCGGCATTCAGCACCGGATTTTTGGATACGTAGTTGGAATTCCTATCTATACAGCACGTTTTCTTGAATTCGCCATAATGGGACTAATCTATAGAATAACACGTTTACATGTCTTTTCAAAATGGCAAGTGGATGGAGATCTCATTTTAGTAGCCCCTATTCCAATATTTGTGGTAGCCAGGTTTCTATTTGGAGTTGCCCTTTTGCTTGGATTATTTATCCAAATGTGGCGACGTAGGCATTGCTCAATGTATGAGAACATTGAAACGTTTTTGCTACAAAACAATCTAAATCCTATTAGGTACGGATATAGAGAAATTAAGAAGATGAGCAGAGATTTCAAAGTTAAATTGGGTGAAGGAGGTTTCGGATCTGTATACAAAGGAAAACTTCAAAATGGGCCAGAAATAGCCATAAAGATGTTGAAAAAATCAAAAGCTGATGGAGAAGAGTTTATTAATGAAGTGGCTAGTATTGGAAGAATACATCATGTAAATGTGGTACATCTTATTGGATATTGTGCTGAAGGAGAAAACCGTGCCTTGGTTTATGAATACATGAGAAATGGTTCATTGGATAAATACATCTTCTCCAAGGATGAAAGTATCCCTTTAAGTTACGAGAAAACATACGAAATATCTCTTGGCATAGCTCGTGGGATTGCTTATCTTCATCAAGGGTGTGATGTGCAAATTCTACATTTTGATATTAAGCCTCATAATATTCTTCTAGATGATAACTTCGTTCCAAAGGTTTCAGATTTCGGACTTGCAAAGTTGTATCGTGTCAAAGATACGTCTATTGCTTTAACTAAAGCTAGAGGAACTTTGGGTTACATGGCTCCAGAACTATTCTACAATAATATTGGTGGAGTATCAAATAAGGCCGATGTCTATAGTTTTGGAATGCTTTTGATGGAAATGGTAAGTAGGAGAAGGAACTCAAATCCTCATGCAGAACATTCAAGCAAACAATACTTCCCCTTTTGGGTCTATGATCAAATTAAAGATGAAAAAGATACTCAAATAGAAGATGCCTCAGAAGAGGATAAGATTTTGGTGAAAAAAATGTATGTAGTTGCTCTCTGGTGTATACAATTGAAACCAAATGACCGTCCTTCAATTAAAAGAGTTGTGGATATGTTGGAAGAAAGAGCTGAAAGTCTTGAAATGCCTCCTAAGCCTGTTTATTATCCCCATGAAACAATTGGACATGATGGTGGAGAGAATTCAAACCAAACATCATCGAGTGGTTCAACCAGTTCTAGCAAAAGTCTTGGCGCAACCAACACTAATCATCCATGGCAGAGCAATGCTTAA 2148 0.3929 MVFLSSFWCSAQSVIARVAIIIVLFQQTHGAQDHPFCAPSSCGKIRNITYPFRLKGDSPGCGLARYELDCVKNVTVFTLFSGKYHVQNIDYETYKIQLTDAGVVEDTVCSIPRYFLFSKSFTYIGGPDNYATDPLTFWNGDGVSSFPPYVAFLNCSDPVTDDTRYVEVNGTLCDSGGHVYAVLYSNHGEFKTMDIKVGCRLMVATFANWNNGNNVSVSYVDIHEWLHNGFWLSWALVKCIDQCGKGVGCFINQTTHRIGCYQNYCHVMQFDFGKGKCGIQHRIFGYVVGIPIYTARFLEFAIMGLIYRITRLHVFSKWQVDGDLILVAPIPIFVVARFLFGVALLLGLFIQMWRRRHCSMYENIETFLLQNNLNPIRYGYREIKKMSRDFKVKLGEGGFGSVYKGKLQNGPEIAIKMLKKSKADGEEFINEVASIGRIHHVNVVHLIGYCAEGENRALVYEYMRNGSLDKYIFSKDESIPLSYEKTYEISLGIARGIAYLHQGCDVQILHFDIKPHNILLDDNFVPKVSDFGLAKLYRVKDTSIALTKARGTLGYMAPELFYNNIGGVSNKADVYSFGMLLMEMVSRRRNSNPHAEHSSKQYFPFWVYDQIKDEKDTQIEDASEEDKILVKKMYVVALWCIQLKPNDRPSIKRVVDMLEERAESLEMPPKPVYYPHETIGHDGGENSNQTSSSGSTSSSKSLGATNTNHPWQSNA 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00232 715 SUPERFAMILY Protein kinase-like (PK-like) 375 659 IPR011009 -
Viun11g00232 715 MobiDBLite consensus disorder prediction 682 715 - -
Viun11g00232 715 ProSitePatterns Serine/Threonine protein kinases active-site signature. 508 520 IPR008271 GO:0004672|GO:0006468
Viun11g00232 715 FunFam serine/threonine-protein kinase PBS1-like 359 462 - -
Viun11g00232 715 Gene3D Transferase(Phosphotransferase) domain 1 463 668 - -
Viun11g00232 715 FunFam PR5-like receptor kinase 463 670 - -
Viun11g00232 715 Pfam Protein kinase domain 391 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00232 715 ProSiteProfiles Protein kinase domain profile. 388 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00232 715 CDD STKc_IRAK 394 660 - -
Viun11g00232 715 Pfam Wall-associated receptor kinase galacturonan-binding 37 100 IPR025287 GO:0030247
Viun11g00232 715 SMART serkin_6 388 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00232 715 ProSitePatterns Protein kinases ATP-binding region signature. 394 416 IPR017441 GO:0005524
Viun11g00232 715 PANTHER RUST RESISTANCE KINASE LR10-RELATED 360 686 IPR045874 GO:0004672
Viun11g00232 715 Gene3D Phosphorylase Kinase; domain 1 365 462 - -
Viun11g00232 715 MobiDBLite consensus disorder prediction 668 715 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00232 Viun-Chr11 1852738 1855941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00232 33 672 Receptor kinase-like Gene Family AT1G66910 36.254 6.37e-111 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Viun11g00232 Pkinase 1.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00232 - - pvu:PHAVU_011G198500g 1044.26