Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00214 ATGAGTCCTCCAGCTGAATCCAACACGATGGAAGATGGCACGCGAGAAAATGCCACAGACCAAGTTGTGTCTCGCTTCAACGAGTTCCTCAAGAATGAATTAGCATTGGAAGAGAAAAGCTGTAAAGAGGCAATCAATTTGCTTGGAGAAACCAAACATATACTTCTGACAAATATTTCGTCAATGGGGAATGGAACGTCTGAAGAAGCTGAGCGGTATTGGTTTGCTTTTATTTCGTACTCTGTCAAGAAATTGATCCACAAAAATGAGGAGGCTGGAAAGGAAGAGAATGTGAACTCCGGGCTTAGCTTGTGTCGTATATTGAGAGCAGCTAAGCTCAACATTGCAGATTTTTTCAAAGAACTTCCACAGTTTGTTGTTAAGGCTGGTCCAACATTAAGTAATATATATGGAACAGATTGGGAAAACAGGCTGGAGGCGAAGGAGATACATGCCAATGCTATTCACTTAAAGATTCTTAGCAAGTACTATAAACGTGTATTTGGAGAGTTCTTTGTGACAACTGACTCAAATGCTGAAAAGAACTCATCTGTTACTGTTCATGCATCTGAATACCATAGATTTGGTTGGTTGCTTTTCTTAGCTCTTCGTCTACATGCTTTCAGCCGCTTCAGAGACTTGGTGACTTGCACCAATGGTCTAATTTCAATCTTGGCCATCTTAATTATTCATGTTCCTACTCGGTTTCGGAATTTCAACATTCATGACTCATCACGCTTTGTTAAGAAAAATAACAAAGCTGTGGACCTCCTTGCTTCACTTTGCAACATATACAACACTACTGAAGATGAGTTGAGGAAAACAATGGAGAAAGCCAATAATGTAATAGCAGATATATTGAAGAAGAAGCCCTGCTTGGCATCTGAATGCGAAACTGAAAACTTAGAAAATATTGATAAAGATGGTTTGACGTATTTTAAAGACTTGATGGAAGAATCATCTCTACCTTCTAGTTTAAATTTATTAGAAAAAGATTATGATTACATGATTCGCAACAAGAGTGAACTGGATGAGAGGTTATTCATTAATGAAGATGACAGCCTATTAGCTTCTGGAAGCTTGTCTGGAGGTTCTGTTTCAGCAGGTGGTGTAAAGAGGAAATTTGATTCACTGGCATCACCTGCTAAGACCATTACAAGTCCACTCTCACCTCACCGCTCTCCCTCATCACATGCTAATGGCATCCCTGGTAGTGCAAACTCAAAGATGGCAGCCACCCCTGTAAGCACAGCAATGACTACAGCAAAGTGGCTTCGAACTGTCATTTCTCCACTTCCACCAAAGCCCTCGCAAGAGCTGGAACGATTTCTGACATCATGTGATAGGGATGTTACAAGCGATGTAGTGCGCAGAGCACAAATTATATTGCAGGCTACATTTCCTAGTAGTCCACTTGGAGAACTATGTGTAACTGGAAGCCTGCAAAGTGCAAACCTCATGGACAATATATGGGCAGAACAGAGAAGATTGGAAGCACTGAAGTTATACTACAGGGTCTTGGAGGCAATGTGCAGAGCTGAAGCTCAAGTTTTTCATGCAACTAATTTGACCTCTCTTCTTACCAATGAGAGGTTTCATCGTTGTATGCTTGCATGTTCTGCAGAATTAGTCCTGGCAACTCATAAGACTGTAACAATGTTGTTCCCTGCAGTACTTGAGAGGACTGGAATTACAGCCTTTGATCTTAGCAAGGTGATTGAAAGTTTCATTAGACATGAAGAATCTCTGCCAAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAGCGACTTTTGGAGAGCATGGTATGGGAAAAGGGTTCTTCAATGTATAATTCTTTGGCAGTTGCCAGACCTGCCCTTTCTGCAGAGATTAACCGCCTGGGGCTGTTAGCTGAACCAATGCCATCATTGGATGAAATTGCAATGCAAATTAACTTCTCTTGTGGAGGGCTGCCACCAGTGCCTACCTTACCCAAGCTTGAAAGTTCACCAACTCAGAATGGGGATATCAGATCACCAAAGCGAAATGTGCTGATGGAAAGAAATTCGTTCACTTCTCCTGTGAAGGATCGGCTTCTTCCTTTCAGCAACCTGAAGTCAAAACTACCCCCACCTCCTTTGCAGTCCGCGTTTTCCAGCCCAACAAAGCCAAATCCAGCAGGTGGAGGGGAAACGTGTGCAGAAACTGGGATTAACATCTTTTTCGGCAAGATCATTAAGTTGGGAGCGGTCAGAATTAGTGGCATGGTTGAAAGACTACAATTGTCTCAGCAGATAAGGGAGAATGTATACTGTCTTTTCCAGCGGATCCTAAATCAACGGACATCTCTCTTTTTCAACCATCATATTGACCAAATCATCTTGTGTTGTTTCTATGGAGTTGCAAAGATTTCACAATTAAACCTAACTTTTAGAGAGATAGTATACAACTACAGAAAGCAACCACATTGCAAACCACAAGTTTTCCGCAGTGTATTTGTTGATTGGTCATTAGCACGCCGAAATGGGAGAACAGGACAGGATCATGTTGACATTATCACCTTTTACAATGAAATATTTATTCCCTCAGTGAAGCCTCTGTTGGTTGAACTCGACCCTTCTGGAGCAACGACAAAAAATGACCGAATACCTGAAGTTATTAATAAAAATGATGGCCATTTAGCTCAATGTCCAGGATCTCCTAAAATATCATCTTTCCCTACCCTTCCCGATATGTCTCCAAAAAAAGTATCTGCTACACACAATGTATATGTCTCTCCGTTACGATCGTCCAAGATGGATGCTCTAATATCACATAGCTCCAAAAGCTATTATGCTTGTGTTGGGGAGAGCACTATTGCTTATCAGAGCCCTTCAAAAGACCTGACTGCCATCAATAACCGTTTGAATGGCAACAGGAAGGTGAGAGGACCCCTGAATTTTGATGATGTTGATGTGGGCTTGGTTAGTGATTCTATGGTTGCAAACAGCCTCTATCTGCAGAATGGAAGTTGTGCATCATCATCAGGTGCACCAGTGAAATCAGAGCAACCTGATTCTTAA 3045 0.4167 MSPPAESNTMEDGTRENATDQVVSRFNEFLKNELALEEKSCKEAINLLGETKHILLTNISSMGNGTSEEAERYWFAFISYSVKKLIHKNEEAGKEENVNSGLSLCRILRAAKLNIADFFKELPQFVVKAGPTLSNIYGTDWENRLEAKEIHANAIHLKILSKYYKRVFGEFFVTTDSNAEKNSSVTVHASEYHRFGWLLFLALRLHAFSRFRDLVTCTNGLISILAILIIHVPTRFRNFNIHDSSRFVKKNNKAVDLLASLCNIYNTTEDELRKTMEKANNVIADILKKKPCLASECETENLENIDKDGLTYFKDLMEESSLPSSLNLLEKDYDYMIRNKSELDERLFINEDDSLLASGSLSGGSVSAGGVKRKFDSLASPAKTITSPLSPHRSPSSHANGIPGSANSKMAATPVSTAMTTAKWLRTVISPLPPKPSQELERFLTSCDRDVTSDVVRRAQIILQATFPSSPLGELCVTGSLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQVFHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPALSAEINRLGLLAEPMPSLDEIAMQINFSCGGLPPVPTLPKLESSPTQNGDIRSPKRNVLMERNSFTSPVKDRLLPFSNLKSKLPPPPLQSAFSSPTKPNPAGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQRTSLFFNHHIDQIILCCFYGVAKISQLNLTFREIVYNYRKQPHCKPQVFRSVFVDWSLARRNGRTGQDHVDIITFYNEIFIPSVKPLLVELDPSGATTKNDRIPEVINKNDGHLAQCPGSPKISSFPTLPDMSPKKVSATHNVYVSPLRSSKMDALISHSSKSYYACVGESTIAYQSPSKDLTAINNRLNGNRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGAPVKSEQPDS 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00214 1014 FunFam Retinoblastoma-related protein 1 682 895 - -
Viun11g00214 1014 Gene3D - 416 604 - -
Viun11g00214 1014 Pfam Retinoblastoma-associated protein B domain 732 859 IPR002719 GO:0005634|GO:0051726
Viun11g00214 1014 Gene3D - 696 881 - -
Viun11g00214 1014 MobiDBLite consensus disorder prediction 385 409 - -
Viun11g00214 1014 Pfam Retinoblastoma-associated protein A domain 413 614 IPR002720 GO:0005634|GO:0051726
Viun11g00214 1014 Gene3D - 192 350 - -
Viun11g00214 1014 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 20 1012 IPR028309 GO:0006357|GO:0051726
Viun11g00214 1014 SUPERFAMILY Cyclin-like 421 616 IPR036915 -
Viun11g00214 1014 Coils Coil 27 47 - -
Viun11g00214 1014 Coils Coil 269 289 - -
Viun11g00214 1014 MobiDBLite consensus disorder prediction 704 723 - -
Viun11g00214 1014 SMART DUF3452_2 83 231 IPR024599 -
Viun11g00214 1014 SUPERFAMILY Cyclin-like 730 869 IPR036915 -
Viun11g00214 1014 FunFam Retinoblastoma-related protein 1 192 350 - -
Viun11g00214 1014 CDD CYCLIN_AtRBR_like 732 863 - -
Viun11g00214 1014 SMART RB_A_2 413 614 IPR002720 GO:0005634|GO:0051726
Viun11g00214 1014 Pfam Domain of unknown function (DUF3452) 99 231 IPR024599 -
Viun11g00214 1014 FunFam Retinoblastoma-related protein 1 416 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00214 Viun-Chr11 1717802 1726002 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00214 1 1014 Core Cell Cycle Gene Families AT3G12280 69.096 0.0 1395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Viun11g00214 RB_A 1.9e-64 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00214 K04681 - gmx:100779266 1834.31