Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00213 ATGAGTCCTCCAGCTGAATCCAACACGATGGAAGATGGCACGCGAGAAAATGCCACAGACCAAGTTGTGTCTCGCTTCAACGAGTTCCTCAAGAATGAATTAGCATTGGAAGAGAAAAGCTGTAAAGAGGCAATCAATTTGCTTGGAGAAACCAAACATATACTTCTGACAAATATTTCGTCAATGGGGAATGGAACGTCTGAAGAAGCTGAGCGGTATTGGTTTGCTTTTATTTCGTACTCTGTCAAGAAATTGATCCACAAAAATGAGGAGGCTGGAAAGGAAGAGAATGTGAACTCCGGGCTTAGCTTGTGTCGTATATTGAGAGCAGCTAAGCTCAAGTATTTTACTGGCCTTTTGACTAGCATGTTAGTTTGTACTTTGTATTTTTTTAGTACTTACTGTCATATTCATTTTCTATTAAACAGCATTGCAGATTTTTTCAAAGAACTTCCACAGTTTGTTGTTAAGGCTGGTCCAACATTAAGTAATATATATGGAACAGATTGGGAAAACAGGCTGGAGGCGAAGGAGATACATGCCAATGCTATTCACTTAAAGATTCTTAGCAAGTACTATAAACGTGTATTTGGAGAGTTCTTTGTGACAACTGACTCAAATGCTGAAAAGAACTCATCTGTTACTGTTCATGCATCTGAATACCATAGATTTGGTTGGTTGCTTTTCTTAGCTCTTCGTCTACATGCTTTCAGCCGCTTCAGAGACTTGGTGACTTGCACCAATGGTCTAATTTCAATCTTGGCCATCTTAATTATTCATGTTCCTACTCGGTTTCGGAATTTCAACATTCATGACTCATCACGCTTTGTTAAGAAAAATAACAAAGCTGTGGACCTCCTTGCTTCACTTTGCAACATATACAACACTACTGAAGATGAGTTGAGGAAAACAATGGAGAAAGCCAATAATGTAATAGCAGATATATTGAAGAAGAAGCCCTGCTTGGCATCTGAATGCGAAACTGAAAACTTAGAAAATATTGATAAAGATGGTTTGACGTATTTTAAAGACTTGATGGAAGAATCATCTCTACCTTCTAGTTTAAATTTATTAGAAAAAGATTATGATTACATGATTCGCAACAAGAGTGAACTGGATGAGAGGTTATTCATTAATGAAGATGACAGCCTATTAGCTTCTGGAAGCTTGTCTGGAGGTTCTGTTTCAGCAGGTGGTGTAAAGAGGAAATTTGATTCACTGGCATCACCTGCTAAGACCATTACAAGTCCACTCTCACCTCACCGCTCTCCCTCATCACATGCTAATGGCATCCCTGGTAGTGCAAACTCAAAGATGGCAGCCACCCCTGTAAGCACAGCAATGACTACAGCAAAGTGGCTTCGAACTGTCATTTCTCCACTTCCACCAAAGCCCTCGCAAGAGCTGGAACGATTTCTGACATCATGTGATAGGGATGTTACAAGCGATGTAGTGCGCAGAGCACAAATTATATTGCAGGCTACATTTCCTAGTAGTCCACTTGGAGAACTATGTGTAACTGGAAGCCTGCAAAGTGCAAACCTCATGGACAATATATGGGCAGAACAGAGAAGATTGGAAGCACTGAAGTTATACTACAGGGTCTTGGAGGCAATGTGCAGAGCTGAAGCTCAAGTTTTTCATGCAACTAATTTGACCTCTCTTCTTACCAATGAGAGGTTTCATCGTTGTATGCTTGCATGTTCTGCAGAATTAGTCCTGGCAACTCATAAGACTGTAACAATGTTGTTCCCTGCAGTACTTGAGAGGACTGGAATTACAGCCTTTGATCTTAGCAAGGTGATTGAAAGTTTCATTAGACATGAAGAATCTCTGCCAAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAGCGACTTTTGGAGAGCATGGTATGGGAAAAGGGTTCTTCAATGTATAATTCTTTGGCAGTTGCCAGACCTGCCCTTTCTGCAGAGATTAACCGCCTGGGGCTGTTAGCTGAACCAATGCCATCATTGGATGAAATTGCAATGCAAATTAACTTCTCTTGTGGAGGGCTGCCACCAGTGCCTACCTTACCCAAGCTTGAAAGTTCACCAACTCAGAATGGGGATATCAGATCACCAAAGCGAAATGTGCTGATGGAAAGAAATTCGTTCACTTCTCCTGTGAAGGATCGGCTTCTTCCTTTCAGCAACCTGAAGTCAAAACTACCCCCACCTCCTTTGCAGTCCGCGTTTTCCAGCCCAACAAAGCCAAATCCAGCAGGTGGAGGGGAAACGTGTGCAGAAACTGGGATTAACATCTTTTTCGGCAAGATCATTAAGTTGGGAGCGGTCAGAATTAGTGGCATGGTTGAAAGACTACAATTGTCTCAGCAGATAAGGGAGAATGTATACTGTCTTTTCCAGCGGATCCTAAATCAACGGACATCTCTCTTTTTCAACCATCATATTGACCAAATCATCTTGTGTTGTTTCTATGGAGTTGCAAAGATTTCACAATTAAACCTAACTTTTAGAGAGATAGTATACAACTACAGAAAGCAACCACATTGCAAACCACAAGTTTTCCGCAGTGTATTTGTTGATTGGTCATTAGCACGCCGAAATGGGAGAACAGGACAGGATCATGTTGACATTATCACCTTTTACAATGAAATATTTATTCCCTCAGTGAAGCCTCTGTTGGTTGAACTCGACCCTTCTGGAGCAACGACAAAAAATGACCGAATACCTGAAGTTATTAATAAAAATGATGGCCATTTAGCTCAATGTCCAGGATCTCCTAAAATATCATCTTTCCCTACCCTTCCCGATATGTCTCCAAAAAAAGTATCTGCTACACACAATGTATATGTCTCTCCGTTACGATCGTCCAAGATGGATGCTCTAATATCACATAGCTCCAAAAGCTATTATGCTTGTGTTGGGGAGAGCACTATTGCTTATCAGAGCCCTTCAAAAGACCTGACTGCCATCAATAACCGTTTGAATGGGAAGGTGAGAGGACCCCTGAATTTTGATGATGTTGATGTGGGCTTGGTTAGTGATTCTATGGTTGCAAACAGCCTCTATCTGCAGAATGGAAGTTGTGCATCATCATCAGGTGCACCAGTGAAATCAGAGCAACCTGATTCTTAA 3126 0.4127 MSPPAESNTMEDGTRENATDQVVSRFNEFLKNELALEEKSCKEAINLLGETKHILLTNISSMGNGTSEEAERYWFAFISYSVKKLIHKNEEAGKEENVNSGLSLCRILRAAKLKYFTGLLTSMLVCTLYFFSTYCHIHFLLNSIADFFKELPQFVVKAGPTLSNIYGTDWENRLEAKEIHANAIHLKILSKYYKRVFGEFFVTTDSNAEKNSSVTVHASEYHRFGWLLFLALRLHAFSRFRDLVTCTNGLISILAILIIHVPTRFRNFNIHDSSRFVKKNNKAVDLLASLCNIYNTTEDELRKTMEKANNVIADILKKKPCLASECETENLENIDKDGLTYFKDLMEESSLPSSLNLLEKDYDYMIRNKSELDERLFINEDDSLLASGSLSGGSVSAGGVKRKFDSLASPAKTITSPLSPHRSPSSHANGIPGSANSKMAATPVSTAMTTAKWLRTVISPLPPKPSQELERFLTSCDRDVTSDVVRRAQIILQATFPSSPLGELCVTGSLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQVFHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPALSAEINRLGLLAEPMPSLDEIAMQINFSCGGLPPVPTLPKLESSPTQNGDIRSPKRNVLMERNSFTSPVKDRLLPFSNLKSKLPPPPLQSAFSSPTKPNPAGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQRTSLFFNHHIDQIILCCFYGVAKISQLNLTFREIVYNYRKQPHCKPQVFRSVFVDWSLARRNGRTGQDHVDIITFYNEIFIPSVKPLLVELDPSGATTKNDRIPEVINKNDGHLAQCPGSPKISSFPTLPDMSPKKVSATHNVYVSPLRSSKMDALISHSSKSYYACVGESTIAYQSPSKDLTAINNRLNGKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGAPVKSEQPDS 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00213 1041 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 20 1039 IPR028309 GO:0006357|GO:0051726
Viun11g00213 1041 SMART DUF3452_2 83 260 IPR024599 -
Viun11g00213 1041 FunFam Retinoblastoma-related protein 1 445 633 - -
Viun11g00213 1041 Pfam Domain of unknown function (DUF3452) 143 260 IPR024599 -
Viun11g00213 1041 Coils Coil 298 318 - -
Viun11g00213 1041 MobiDBLite consensus disorder prediction 733 752 - -
Viun11g00213 1041 FunFam Retinoblastoma-related protein 1 711 924 - -
Viun11g00213 1041 Pfam Retinoblastoma-associated protein A domain 442 643 IPR002720 GO:0005634|GO:0051726
Viun11g00213 1041 Gene3D - 725 910 - -
Viun11g00213 1041 Gene3D - 221 379 - -
Viun11g00213 1041 SUPERFAMILY Cyclin-like 759 898 IPR036915 -
Viun11g00213 1041 FunFam Retinoblastoma-related protein 1 221 379 - -
Viun11g00213 1041 MobiDBLite consensus disorder prediction 414 438 - -
Viun11g00213 1041 SUPERFAMILY Cyclin-like 450 645 IPR036915 -
Viun11g00213 1041 Pfam Retinoblastoma-associated protein B domain 761 888 IPR002719 GO:0005634|GO:0051726
Viun11g00213 1041 CDD CYCLIN_AtRBR_like 761 892 - -
Viun11g00213 1041 Coils Coil 27 47 - -
Viun11g00213 1041 SMART RB_A_2 442 643 IPR002720 GO:0005634|GO:0051726
Viun11g00213 1041 Gene3D - 445 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00213 Viun-Chr11 1717801 1726002 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00213 1 1041 Core Cell Cycle Gene Families AT3G12280 66.635 0.0 1373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Viun11g00213 RB_A 2e-64 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00213 K04681 - gmx:100779266 1807.73