Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00211 ATGGCATTAGAACTTGTTGGTGGTGCTCTTCTTTCTGTTTTCCTTGATGTTGCATTTCAGAAGCTAGCTTCTCCTCAAATTCTCGATTTCTTTCATGCAAGAAAGCTTGATGAGAAGCTGCTGAACAAGTTGGAAACCAAGCTGCATTCCATCCATTCTCTGGCTGATGATGCAGAGGGAAAGCAGTTCACGGATCCACATGTCAGAAACTGGTTGCTTGAGGTCAAAGATGCTGTCCTTGATGCAGAGGATCTCTTGGATGATATACAAATGCTCTCCAAAAGAGGAGTGGATGCTGATTCTGAATCTCAAACCTTTTCGGGTTGCACTTGCAAGGTACTCGATTTCTTCAAATCCTCTCGTATTAGTTCCCTTAACAAGGAGATTGAGTCTAGGATGGAACAAATCCTTGACGGCTTAGAATTTCTCTCAAGCCAAAAGGGTGCTCTAGGATTGAAAAAAGCTAGCGGTGTTGGATCTGGGTTGAGCAGTGAACTGCCACAGAAATCACAAACAACATCGTTGGTTGTTGGAACTGATTTTTATGGCAGAGATCACGATAAAGAACTGATCTTTGACTGGCTGATATCCGACGACAACAGTACTAACCGGCCATCAATACTTTCTATTGTGGGAATGGGTGGGGTGGGTAAGACCACTCTTGCTCAACATGTATTCAATGACCCAAGAGTGGATGAGGCCAAATTTGATTTCAAAGCTTGGGTTTGCGTTTCAGACGAATTTGATGTTTTCAAAGTATCAAGAGCAATTCTTGAGGCGGTTATTGGATCAACTGATGATAGTAGAAATTTAGAGATGGTCCACAGAAGATTGAAAGAGAAATTGACTGAGAAGAAATTTCTTCTTGTTTTGGATGACGTTTGGAATGAAAACCAATCTAAATGGGAAGACGTGCAAAAGTCCCTTGTTTTCGGAGCTAAGGGGAGTAGGATTCTTGTGACTACACGTAGTAAGGAAGTTGCTTCTACCATGGGGTCAAAAGAGCACTCCCTCAAGCAATTGCAGAGAGATGATTGCTGGAAGTTGTTTGCTAAACATGCATTTCGAGATGATGATACTGAGCCAAATCCAGAGTGTAGAGAGATTGGCATGAAGATTGTTGAAAAATGTAAAGGACTACCTCTTGCCTTGAAAACAATGGGAAGTCTATTATACAGAAAATCATCTATTTCAGAATGGAAATCTGTGTTCCAAAGCGAAATATGGGATTTTTCACAAGACCGTTATGATATTGTTCCTGCTTTAGCATTGAGTTATATCCACCTTTCTTCACACCTCAAGGTATGCTTTGCTTACTGTGCCCTATTCCCCAAGGATTACGAGTTTAGAAAGGAAGATTTGTTTCAGTTGTGGATGACTGAAAATTTCCTACACTGTTCTCAACACAGTAGGACTCCAGAAGATGTTTGCCAACAATACTTCAATGATTTACTATCAAGGTCCTTCTTTCAACAATCGGATGAAAAGGAAGAGGTATTTGTTATGCATGACCTTATACATGATTTGGCAAACTATGTTGGGGGAGGCATATACTTCATGTGGGAAGTTGGTAAAACAGAGAAGATACAAAAAGTTACTCGTCATTTTTCAGTTAAACTTAGATACAATCAGTATTTTGATGGGTTTGGAAAGTTATGTAGTACAAAAAAGTTGCGTACATTTATGCCAACAGGTGGTTTACTACTCAATATGTCGATACATGAATTGTTCTCCAAGTTTAAGCTTTTACAAATGTTATCTTTGTGTTTTGTTTTGAACCTTGAAGAGTTACCTGACTCTGTTGGTAATCTTGAGCATCTTCGTTCATTAGACCTCTCCAATACTGCAATTAAGAAACTAACTGAAAAGATATGTTCACTCACCCTCTTGCAAATACTGAAGTTGAACTTTTGTAGAGATTTGGAGGAGTTGCCCTCAAATTTGTATTTACTCACCAATTTGTATCGCCTTGAATTTATAGAGACTAAAGTGAGAAAGGTGCCTCCGCATTTGGAAAAACTGAAGAATCTTAAAGTAATAATGAATTTTAGTGTTGGCCATGGCAGGGAGTTCGGTATTCAACACTCTTGA 2091 0.3936 MALELVGGALLSVFLDVAFQKLASPQILDFFHARKLDEKLLNKLETKLHSIHSLADDAEGKQFTDPHVRNWLLEVKDAVLDAEDLLDDIQMLSKRGVDADSESQTFSGCTCKVLDFFKSSRISSLNKEIESRMEQILDGLEFLSSQKGALGLKKASGVGSGLSSELPQKSQTTSLVVGTDFYGRDHDKELIFDWLISDDNSTNRPSILSIVGMGGVGKTTLAQHVFNDPRVDEAKFDFKAWVCVSDEFDVFKVSRAILEAVIGSTDDSRNLEMVHRRLKEKLTEKKFLLVLDDVWNENQSKWEDVQKSLVFGAKGSRILVTTRSKEVASTMGSKEHSLKQLQRDDCWKLFAKHAFRDDDTEPNPECREIGMKIVEKCKGLPLALKTMGSLLYRKSSISEWKSVFQSEIWDFSQDRYDIVPALALSYIHLSSHLKVCFAYCALFPKDYEFRKEDLFQLWMTENFLHCSQHSRTPEDVCQQYFNDLLSRSFFQQSDEKEEVFVMHDLIHDLANYVGGGIYFMWEVGKTEKIQKVTRHFSVKLRYNQYFDGFGKLCSTKKLRTFMPTGGLLLNMSIHELFSKFKLLQMLSLCFVLNLEELPDSVGNLEHLRSLDLSNTAIKKLTEKICSLTLLQILKLNFCRDLEELPSNLYLLTNLYRLEFIETKVRKVPPHLEKLKNLKVIMNFSVGHGREFGIQHS 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00211 696 Pfam NB-ARC domain 187 405 IPR002182 GO:0043531
Viun11g00211 696 Gene3D Ribonuclease Inhibitor 550 690 IPR032675 -
Viun11g00211 696 FunFam Probable disease resistance protein At5g66910 340 425 - -
Viun11g00211 696 SUPERFAMILY L domain-like 501 680 - -
Viun11g00211 696 Gene3D - 19 124 - -
Viun11g00211 696 Pfam Rx N-terminal domain 11 96 IPR041118 -
Viun11g00211 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 440 IPR027417 -
Viun11g00211 696 Gene3D - 425 512 IPR036388 -
Viun11g00211 696 FunFam Probable disease resistance protein At1g61300 164 336 - -
Viun11g00211 696 PANTHER DISEASE RESISTANCE PROTEIN RP 41 679 IPR044974 GO:0006952
Viun11g00211 696 FunFam Probable disease resistance protein At1g63360 426 512 - -
Viun11g00211 696 Gene3D - 340 424 IPR042197 -
Viun11g00211 696 PRINTS Disease resistance protein signature 207 222 - -
Viun11g00211 696 PRINTS Disease resistance protein signature 602 618 - -
Viun11g00211 696 PRINTS Disease resistance protein signature 377 391 - -
Viun11g00211 696 PRINTS Disease resistance protein signature 281 295 - -
Viun11g00211 696 Gene3D - 165 339 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00211 Viun-Chr11 1707038 1709535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00211 208 404 WRKY Transcription Factor Family AT5G45050 28.095 1.58e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00211 - - vra:106755071 1209.51