Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00173 ATGACATTGGGGTCTATATTTAAGGGCTTGTGTTATATACATGTTGTCAAGACCTATCTGATCAACCCTTTAGCGACCTTTGGTCCTAGCATGGTTCCTACAATCGATTCGACACCAAGTGTGTTCTTGTCTGAAAAGATCTCAACCCGATTTGGTAAAGTTGATCGTGGAGATATTGTAGTCTTGTGCGACCCTCAAAAACCTGCACACTTTCTGACCAAACGTGTGATTGGATTGGAGGGTGATAGGATTACATACAGTACCAATCCAGAGACCAAGGACTTGGTGGATGATAATTTTACACACATTTCATATCCTGAGAACAATGATATGCCTAAGACGGTTGTGGTTCCAAAGGGTAGCGTTTGGGTAGAGGGAGATAACAAGTATGACAGCCGTGATTCTAGAAAATTTGGTCCTATTCCTTATGGTCTTATTTACGGCAAGATATTCTGGAGGATATACCCGTTTCAATATTTTGGACCTTTCTGGAATAAATGA 501 0.4092 MTLGSIFKGLCYIHVVKTYLINPLATFGPSMVPTIDSTPSVFLSEKISTRFGKVDRGDIVVLCDPQKPAHFLTKRVIGLEGDRITYSTNPETKDLVDDNFTHISYPENNDMPKTVVVPKGSVWVEGDNKYDSRDSRKFGPIPYGLIYGKIFWRIYPFQYFGPFWNK 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00173 166 NCBIfam signal peptidase I 6 158 IPR000223 GO:0006508|GO:0008236|GO:0016020
Viun11g00173 166 CDD S26_SPase_I 28 150 IPR019533 GO:0004252|GO:0006465
Viun11g00173 166 SUPERFAMILY LexA/Signal peptidase 18 164 IPR036286 -
Viun11g00173 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 117 136 IPR000223 GO:0006508|GO:0008236|GO:0016020
Viun11g00173 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 72 84 IPR000223 GO:0006508|GO:0008236|GO:0016020
Viun11g00173 166 PRINTS Bacterial leader peptidase 1 (S26A) family signature 19 35 IPR000223 GO:0006508|GO:0008236|GO:0016020
Viun11g00173 166 Gene3D Umud Fragment, subunit A 15 165 - -
Viun11g00173 166 ProSitePatterns Signal peptidases I signature 3. 122 135 IPR019758 GO:0004252|GO:0016020
Viun11g00173 166 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 5 163 - -
Viun11g00173 166 Pfam Signal peptidase, peptidase S26 5 153 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00173 Viun-Chr11 1425898 1428291 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00173 31 163 MADS-box Gene Family AT1G29960 45.113 4.03e-35 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00173 K09647 - gmx:100805997 233.417