LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun11g00103	ATGGGGAAGATAGAAAAAACAATAAAGACCCTCACACAACCTTTTCTATCACCCTTCATGTCATCATCATCCATGATGGCTATCCTCCTGGTCATCCTCACCATTCTCTTCTCCTTCTTCTCCTCTCCTTCATTGGCCGCAGAATCCTTCCAACCCAAAGACAATTTCTTGATCGATTGTGGCGCAGACACTGCCTCCACCCTCCCTGATGGAAGACATTTCAAAACAGACCCTCAAGCAACTTCTTTCTTGAAAGCCAATGATGAGTACAAGGTTAATGCCCCAGATGCAAAACTCGACTACCCTATATACAAGTCTGCAAGAATCTTCATCCAAGAAGCAGTTTACTCCTTCCATTTGGTGCAACCGGGTTTTCACTGGGTTCGCCTGCATTTCTACCCCATCAAGAACAGTGTCTTTGATCTCCAAAAGGCCACTTTTTCCGTCTTCACAGACACCTATGTTCTTCTCCACAGCTTCAACGTCAACAACACTGACAAGCCAATCCTCAAGGAGTACCTCATCAATGCAACCGAGCCTCAGTTCTCGCTCTCCTTCATCCCCATGAAAAACTCCGCCGCTTTCATCAACGGCATTGAGGTTGTTTCAGTTCCTGATGAACTCATCTTCGACACCGCCACCAGCCTCTTCCCGGTGGGGGAATTCTCCGGCATCACATCCTACGGGTTGCAGCCTGTTTTCCGGGTCAACAATGGAGGGCCTCTCATCACCTCGTCCAATGATACCCTTGCGAGAACTTGGGAGCCTGATGAGGCTTTCCTCACAAACAAGAACTTGGCCAAGAGTATCTCTGTGGCCACCAATGCTGTTAAGTTCCCCCAGCACAACCCTGCAATCTCCCCTCTCACAGCTCCACAGACTGTGTATGCTTCCGCCACTGAGATGGCTGATGCTGGTGTCAACAACCCGAATTTCAACGTGTCGTGGAAATTTGATGTTGACCCTTCTTTCAGCTACCTTGTTAGGCTTCACTTCTGTGACATTGTTAGCAAAGGGCTGAATCAACTCTACTTTAATGTGTATGTTAATGGGAAAATGGCGATCTCTAACTTTGATTTGTCAGCCACCACCGGTGCCTTGTCAACACCGTATTACAAGGACATTGTGGTGAATGCAACACTGATGACAGAGGAGGGATTGTCAATTCAGGTTGGTCCAGCTTCTGGTGGTAGTGCAAGTGCCAATGCCATTGTGAATGGTATAGAGGTTATAAAGATGAGCAACATTGTGAACAGTTTGGATGGAGAGTTTGGGGTTGATGGAAGATGTGTTAGTGGTTCTAGCCGCGGCACGGTGGCTGCAGTTGGATTTGCCATGATGTTTGGAGCTTTTGTTGGGCTCGGAGCCATGGTGATCAAGTGGCACAAGAGGCCTCAAGACTGGCAGAAGAGGAACAGCTTCTCTTCATGGTTGCTGCCTCTGCATGCTGGTGACACAAGCTTCATGAGCAGCAAGAACTCAATGGGAAAGAGCAATTTTTTCTCCTCATCAATGGGATTAGGCCGGTACTTCTCCTTTGCTGAACTTCAGGAAGCAACCAAGAACTTTGACTCAAAGAACATCATTGGTGTTGGTGGATTTGGCAATGTGTATCTGGGTGTGATAGATGAGGGGACTCAGGTGGCAGTGAAGAGAGGAAACCCTCAATCAGAGCAAGGCATCAACGAATTTCAGACAGAAATCCAAATGTTGTCGAAGCTCAGGCACAGGCACTTGGTGTCCTTGATTGGATACTGTGATGAGAATGATGAGATGATTCTGGTTTATGAGTACATGCCCAATGGACACTTCAGAGACCATCTTTATGGAAAGAACATGCCTCCTCTCTCATGGAAGCAAAGACTAGAGATCTGCATTGGTTCAGCTCGTGGACTTCATTACCTTCACACAGGCACAGCTCAAGGAATCATTCACCGTGATGTCAAGACCACCAACATCTTGCTTGATGAGAATCTGACAGCAAAGGTTTCTGATTTTGGACTTTCCAAGGATGCACCAATGGGACAGGGACATGTTAGCACTGCGGTGAAGGGTAGCTTTGGTTATCTTGACCCTGAGTACTTCAGAAGACAGCAACTCACAGAAAAATCTGATGTGTACTCCTTTGGGGTGGTTCTGCTTGAGGCACTGTGTGCAAGGCCAGCCATCAACCCTCAGTTGCCCCGTGAACAAGTAAACTTGGCCGATTGGGCGATGCAGTGGAAGAGAAAGGGCTTGCTTGACAAGATCATAGACCCTCACCTGGTTGGATCCATCAATCCTGAATCTATGAAGAAGTTTGCTGAGGCTGCTGAGAAGTGTTTGGCTGATCATGGAGTGGATAGGCCTTCAATGGGAGATGTATTGTGGAACTTGGAGTATGCTTTGCAGCTTCAAGAGGCCTTCACACAAGGAAAGGCTGAGGATGAGACAAAGTTATCTGCAGCTGGTGCTCCTCCTTCACCTCTGCCACAGGCACCTGCCACTCCCACCGGTGACACGCCGACACAGCCGCCGGCACCGACGTCACCGGCAGCGGTGGCAGTGCCACGGGCAGAAGTGAATAATCCTACACCAGAAGTACATTCTATTGATGACCATTCTGGAACTGCAATGTTTGCTCAGTTTAACAATCTCAATGGCAGGTAA	2649	0.4806	MGKIEKTIKTLTQPFLSPFMSSSSMMAILLVILTILFSFFSSPSLAAESFQPKDNFLIDCGADTASTLPDGRHFKTDPQATSFLKANDEYKVNAPDAKLDYPIYKSARIFIQEAVYSFHLVQPGFHWVRLHFYPIKNSVFDLQKATFSVFTDTYVLLHSFNVNNTDKPILKEYLINATEPQFSLSFIPMKNSAAFINGIEVVSVPDELIFDTATSLFPVGEFSGITSYGLQPVFRVNNGGPLITSSNDTLARTWEPDEAFLTNKNLAKSISVATNAVKFPQHNPAISPLTAPQTVYASATEMADAGVNNPNFNVSWKFDVDPSFSYLVRLHFCDIVSKGLNQLYFNVYVNGKMAISNFDLSATTGALSTPYYKDIVVNATLMTEEGLSIQVGPASGGSASANAIVNGIEVIKMSNIVNSLDGEFGVDGRCVSGSSRGTVAAVGFAMMFGAFVGLGAMVIKWHKRPQDWQKRNSFSSWLLPLHAGDTSFMSSKNSMGKSNFFSSSMGLGRYFSFAELQEATKNFDSKNIIGVGGFGNVYLGVIDEGTQVAVKRGNPQSEQGINEFQTEIQMLSKLRHRHLVSLIGYCDENDEMILVYEYMPNGHFRDHLYGKNMPPLSWKQRLEICIGSARGLHYLHTGTAQGIIHRDVKTTNILLDENLTAKVSDFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCARPAINPQLPREQVNLADWAMQWKRKGLLDKIIDPHLVGSINPESMKKFAEAAEKCLADHGVDRPSMGDVLWNLEYALQLQEAFTQGKAEDETKLSAAGAPPSPLPQAPATPTGDTPTQPPAPTSPAAVAVPRAEVNNPTPEVHSIDDHSGTAMFAQFNNLNGR	882

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun11g00103	882	ProSiteProfiles	Protein kinase domain profile.	523	795	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00103	882	MobiDBLite	consensus disorder prediction	820	845	-	-
	Viun11g00103	882	SMART	serkin_6	523	795	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun11g00103	882	FunFam	receptor-like protein kinase FERONIA	486	598	-	-
	Viun11g00103	882	CDD	STKc_IRAK	529	793	-	-
	Viun11g00103	882	Pfam	Protein tyrosine and serine/threonine kinase	526	785	IPR001245	GO:0004672\|GO:0006468
	Viun11g00103	882	FunFam	Receptor-like protein kinase FERONIA	599	812	-	-
	Viun11g00103	882	Gene3D	Transferase(Phosphotransferase) domain 1	599	817	-	-
	Viun11g00103	882	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	643	655	IPR008271	GO:0004672\|GO:0006468
	Viun11g00103	882	Gene3D	-	231	415	-	-
	Viun11g00103	882	Gene3D	-	55	204	-	-
	Viun11g00103	882	FunFam	Receptor-like protein kinase FERONIA	229	415	-	-
	Viun11g00103	882	Pfam	Malectin-like domain	58	412	IPR024788	-
	Viun11g00103	882	MobiDBLite	consensus disorder prediction	803	868	-	-
	Viun11g00103	882	SUPERFAMILY	Protein kinase-like (PK-like)	506	790	IPR011009	-
	Viun11g00103	882	Gene3D	Phosphorylase Kinase; domain 1	485	598	-	-
	Viun11g00103	882	FunFam	Putative receptor-like protein kinase	55	205	-	-
	Viun11g00103	882	ProSitePatterns	Protein kinases ATP-binding region signature.	529	551	IPR017441	GO:0005524
	Viun11g00103	882	PANTHER	OS07G0166700 PROTEIN	509	799	IPR045272	GO:0004714\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun11g00103	Viun-Chr11	668693	672254	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun11g00103	50	882	Receptor kinase-like Gene Family	AT4G39110	68.019	0.0	1192

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Viun11g00103		Malectin_like	4.3e-38	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun11g00103	-		-	gmx:100793784	1443.33