Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00099 ATGGAGTCCTCTGTTGACGTGTTATCAGCTAAGCGCTGTCGTTCAACCGGATCTCCCTGTGGCCCTGACACAGGCAAAAGACAGAAGTTATCAGATGTCGCTGACCATACGAATCCATCTGCAATTTCGGATGTTGTGGTTCGTATAGAGCATGGGAAATTTGGAAGTGTCACAAAGGAAATAGAGGACCTTGTAGCCATCAAAATGCAAATACTTGGACCTTACTTTGCAAAGTATCCCGTACTTGTTAATGAATTCAGGAATGTGGTAACTGACCACGATGAAGACACCACTAAATTCGAAGATCAACAAGACACTGGTTTGACATATCATGATGTCATAGATTTGGAGGTGGAAAACTTTGAGAAGGATGTTCGTGCAGCTCCAGTTCCTGTTATTCACATCGATTCAGACGGGGAAGGTGATGAAGATAAAAATGCTATTGTTCCTTTTCATGAAGCCTCAGAGGTGGAAGATGATAGACACAATAAATCTATTGTTCCATTTCATGAAGCTTCAAAAGAGAAAGATGATAGACAAAATAAATCTATTGTTCAGTTTCATGAAATTGTGTTGCCGACGCTTGTTGCACCGTCTCCTGTTGTGATGAAGACAGTCAGGCAGCGTACTCCCATTCCTAACCATCGCAAAAGTAAAGATCCGAAAAAGGAGACAAGTTTGGCGGGTACAGGTGTTTATATCGGTTTAAAGGAGGAAGAGGATCATCAGGTTAACCCCGCAGATAATGAGGGCCTAGAAGATATTTGGAAAGAGATGTCAATGGCAATGGAGTGTTCCAAAGTTGTTTCCGCGGATCCTCTGCCAGATGAAGAAGTAGAAAGAGACTATGAAGAAGCAGAAAGAGACGAGGATTGCGATCATTCTTTTATTTTAAAAGATGATATTGGTTATGTTTGTCGGGTTTGTGGAATTATTGACCGAAGAATTGAAACCATATTTGAGTTTCAGTACAAGGTTAAACGGAGCACAAGAACTTATGCATCTGATTCACGGAATACCAAGAAAACAGATGTATTTGGAGTTAATGTTATTAAAGATGACCTCATAGTTACCGAAATCCCAGCGCACCCTAGACACATGAAACAGATGAAGCCCCATCAAGTTGAAGGATTCAATTTTCTTGTTAGAAATCTTGCAGGTGACAATCCTGGTGGCTGCATCTTAGCCCATGCTCCAGGATCTGGGAAAACATTCATGATAATCAGTTTCATGCAAAGTTTTCTAGGCAAGTATCCGAATGCAAGACCCTTAGTGGTGCTTCCTAAGGGAATATTGTCAACATGGAAAAAGGAGTTTCAAATATGGCAGGTGGAGGACATACCTTTATATGACTTCTACACAGTGAAGGCAGACAGTAGAACTCAACAACTGGAAGTGCTGAATCAATGGGTGGAGAAGAAGAGTATTCTTTTCTTGGGATACAAACAGTTCTCCTCTATTGTCTGTGATAATGGGACCAACGATACATCATTATCTTGCCAAAAAATTTTACTCAAAGTTCCTACAATTCTTATTTTGGACGAGGGACACAATCCTAGGAATGAAAACACAGATATGGTACAATCTCTCGCAAAAGTTGAGACGCCTAGAAAGGTTGTACTGTCAGGAACCCTTTATCAAAATCATGTCAAGGAGGTGTTTAACATTCTAGATCTTGTTCGGCCGAAATTTTTGAAGATGGAAACATCCAAAACTATTGAGAGGCGCATCCGAAGTAGAGTTCATGTATCAGGGATAAAAGACTTCTCTGATTTAGTTGAAAACACTTTGCAGGACACTGATTTTAAAACGAAAATAGCTGTTATACAAGATTTGCGTGAGATGACGAGCAAGGTACTTCACTATTATAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTTGTGGATTTTACTGTAATGCTCACTCTTAGCCCTAGACAGAAGTCTGAAATAGCAAAAATAAAAAAGCAATCTAAAAGAAAGTTCAAGATATCTTCTGTAGGAAGTGCTGTCTATCTGCATCCTAAACTGAAACCACTAGCAGAAAATTGTGGTGAAAATTCTACATCTGATCGTGTAATTGATGACTTGGTAGATAAACTGGATATCAGAGATGGTGTGAAGTCAAAATTTTATCACAACATGCTAAATCTGTGTGAATCAGCAGGGGAGAAGCTTCTAGTTTTCAGTCAGTATCTGTTACCCTTGAAATATTTAGAAAGGTTGACTATTAACTGGAAAGGCTGGAGTCTTGGAAGAGAAATTTTTGTAATCTCAGGAGAATCAAGCTATGAGCACCGAGAATGGTCCATGGAAAAATTTAACAGTTCTCCTGAAGCCAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGTGAAGGTATATCACTGGTTGGGGCCTCTCGCATAATTATCTTGGACGTTCATCTCAATCCATCAGTTACACGTCAAGCTATAGGTCGTGCATTCAGACCCTGCCAGAAGAAGAAGGTGTTTGTGTATCGTTTAGTATCGGCTGATTCTCCAGAAGAAGAAGATCACCATGTTTGTTTCAAGAAAGAGTTAATTTCAAAAATGTGGTTTGAATGGAATGAGTATTGTGGTGATCGAGCTTTTGAAGTTGAGGAAGTTCTTCTGAAAGAGTGTGACGATCTTTTTCTTGAGAGTCCATTGCTTGGAGAAGATGTAAAAGCTCTGTACAAAAGGTAG 2706 0.398 MESSVDVLSAKRCRSTGSPCGPDTGKRQKLSDVADHTNPSAISDVVVRIEHGKFGSVTKEIEDLVAIKMQILGPYFAKYPVLVNEFRNVVTDHDEDTTKFEDQQDTGLTYHDVIDLEVENFEKDVRAAPVPVIHIDSDGEGDEDKNAIVPFHEASEVEDDRHNKSIVPFHEASKEKDDRQNKSIVQFHEIVLPTLVAPSPVVMKTVRQRTPIPNHRKSKDPKKETSLAGTGVYIGLKEEEDHQVNPADNEGLEDIWKEMSMAMECSKVVSADPLPDEEVERDYEEAERDEDCDHSFILKDDIGYVCRVCGIIDRRIETIFEFQYKVKRSTRTYASDSRNTKKTDVFGVNVIKDDLIVTEIPAHPRHMKQMKPHQVEGFNFLVRNLAGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQIWQVEDIPLYDFYTVKADSRTQQLEVLNQWVEKKSILFLGYKQFSSIVCDNGTNDTSLSCQKILLKVPTILILDEGHNPRNENTDMVQSLAKVETPRKVVLSGTLYQNHVKEVFNILDLVRPKFLKMETSKTIERRIRSRVHVSGIKDFSDLVENTLQDTDFKTKIAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVMLTLSPRQKSEIAKIKKQSKRKFKISSVGSAVYLHPKLKPLAENCGENSTSDRVIDDLVDKLDIRDGVKSKFYHNMLNLCESAGEKLLVFSQYLLPLKYLERLTINWKGWSLGREIFVISGESSYEHREWSMEKFNSSPEAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPCQKKKVFVYRLVSADSPEEEDHHVCFKKELISKMWFEWNEYCGDRAFEVEEVLLKECDDLFLESPLLGEDVKALYKR 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00099 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 591 IPR027417 -
Viun11g00099 901 Pfam SNF2-related domain 390 660 IPR000330 GO:0005524|GO:0140658
Viun11g00099 901 Gene3D - 632 889 IPR027417 -
Viun11g00099 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 510 863 IPR027417 -
Viun11g00099 901 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 710 877 IPR001650 -
Viun11g00099 901 Gene3D - 337 605 IPR038718 -
Viun11g00099 901 Pfam Helicase conserved C-terminal domain 717 823 IPR001650 -
Viun11g00099 901 SMART helicmild6 740 825 IPR001650 -
Viun11g00099 901 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 384 563 IPR014001 -
Viun11g00099 901 SMART ultradead3 366 576 IPR014001 -
Viun11g00099 901 CDD SF2_C_SNF 714 836 - -
Viun11g00099 901 MobiDBLite consensus disorder prediction 1 35 - -
Viun11g00099 901 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 38 900 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00099 Viun-Chr11 627408 633505 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00099 722 853 RAD5 or RAD16-like Gene Family AT5G43530 34.091 9.45e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun11g00099 SNF2_N 7.3e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00099 K10875 - gmx:100795356 1324.3