Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00098 ATGGGAAAGAAGAACAAAGTGAAGGAGAATGGAGGCAAAGAGCATTGCCCCTCCACACTTTTCGTCTCCAACTTACCCTATTCCTTTTCCAATTCTCAGTTGGAGGAGACGTTCAGTGAGATTGGACCTGTGAGGCGTTGCTTCATGGTCACACAGAAAGGGTCAGCACAGCATCGGGGTTTCGGTTATGTCCAATTTGCTGTTGAGGAAGATGCCAATCGTGCTATTGAGCTGAAGAATGGTATGTCTGTTGAAGGCCGTAAAATTGGAGTGAAGCATGCAATGCCTCGTCCTCCCCGCGAGGATCGAAAGTCAAAACCAAATAAAGCTGGAACACCAGATGATCTTGTAAAACCAAATGGTGATGATGTAAACGACAGCACATCACTTGGAACAGAGAAGCATGTTTCAATTTTGAAGGAAGAAGTACAAGTCCCAAGTAAACAAAAAAACTCAAAGAAGCCAATGGAAACGAAAAAATCAGCTCTTTGTAATGATGTTGCAGATGATGGTGGTGGCTCAGAAAAACAGAGGGTTGCTAGAACTGTTATATTTGGTGGCCTCAAGGATTCTGATATGGCTGAAGAAGTTCACAGCCAAGCCAGAGAGATTGGCACTGTGTGTTCCATTAAATACCCTCTTTCAAAGAAAGATCTTGAGCAACATGGTCTCATGCAAGATGGCTGTACGATGGATGCATCGTCTGTACTTTATACAAGTGTAAAATCAGCTCGAGTTTCTGTTGCAATGTTGCACAAAAAAGTGATTAGAGGGGAAACAATTTGGGCCCGCCAACTGGGTGGAGAGGGCTCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAACCTTCCTTTCAAGGCAAAAGATACTGAAATAAGAGATATGTTTTCATCTGCTGGATATGTGTGGGACGTATTTATTCCACAAAAGTCAGACACAGGTCTGTCTAAGGGCTTTGCATTTGTAAAATTCACCTGCAAGCAAGATGCAGAAAATGCCATTCAAAAGCTGAATGGATCAAAGTTTGCAAAACGAGTCATAGCTGTTGATTGGGCTGTTCCAAAGAAGATATTTAGTAGTGATGTGAATGATACTCGTGCTTCAGAGAAAGAAGAACAAAACTTGAGTGATGAAGATAGTGACGAGGAGGATGTGGAGCTTGTTGATAAAAGATCTGGCCAAGGAGATGATAGTGATACAAACCACTCCAGTGCCATGGTGGAAGAGGGTGCTCCTCCTGAAGATAATTTTGATGAGGAGGCAGATATTGCAAGAAAGGTGCTTAACAACTTGCTTGGATCCTCAAGCAAAGGAACATCTGAAAACAATGGTTCTATGTTGTCCAAAGAAAACAAAGAGTCAAGACCTGATGAAGTTGTTAAGGATGCAGATGGAAAAGTATCTGATGACTTGGAAAAGGTTTCAGGTGTTTCTAAGCCTGACATTTCCAGCATAAACAACTTATCAAATCCTAAGGGAACAGAAGAAGATTTGCAGAGAACAGTTTTTATAAGTAATCTTCCCTTTGAATGTGATAATGAAGAAGTAAAACAACGATTTTCTGGGTTTGGGGAAGTAGAATACTTTGCTCCTGTTCTCCACCAAGTTACCAAGCGACCAAGAGGAACTGGTTTTCTAAAGTTTAAAACTGTAGAAGCAGCTGATACTGCAATTTCAGCTGCTATTGCTGCTTCTGGGACAGGTATTTTGCTGAAGGGTAGACCGTTGAAAGTTTTAAAGGCTTTGGATAAGAAATCGGCACATGACAAGGAACTGGAGAAAGCAAAAAATAATGAGGTTAATGACCACCGGAATCTTTACTTGGCAAAGGAGGGACTTATTGTTGAGGGAACTACAGCTGCTGAAGGCGTTTCAGCCAGTGATATGTTAAAACGCCAAGAGTTAGAGAGGAAAAAGAAGACAAAGCTTCAATCTCCAAATTTTCATGTTTCAAGAACTAGACTCATTATCTACAACTTACCCAAGTCGATGCATGAGAAAGAACTCAAGAAGCTTTGTATTGATGCAGTCATCTCCAGAGCTACCAAGCAAAAACCATTAATTCGGCAGATAAAGTTTTTGAAAAATGAGAAGAACGGAAAGGTAGCTCAAGAACGCTATTCAAGGGGAGTTGCATTTGTTGAATTTTCTGAGCATCAGCATGCCCTTGTGGCTCTGAGAGTTCTCAACAATAATCCTGAAACATTTGGTCCTGAACATCGACCAATCGTGGAGTTTGCTCTTGATAATGTTCAAACACTTAAACTTCGGAACGCAAAGCTACAATTTCAACAGCAGGCTCCTCAAGATGACAACAATGGTATGAAAAATGACAAACCTGGCAACAAAGAAGATCACAAGCAGGACAGAAAACGAAAGTCCAGAGAGCATGGTGAACCGGGAAAGGAAACAGTAGTGAATACAAATGGTGAATCAGGTGATACACTGGCAAATGGAAAATCCAAAAGACAGAAAGGCAACAAAAAGAACAAAAGGGCACTGAAAGAAAATCCAGAAGCCTTGTCCATGAAGCCAAAGAATAACCAAAATGGCCAGAAAAATGGTGGTGCATCAGCTGAAGATCAAAACACTGCCCCTAACAGAAGAAAATCAGGAAACAAAGATGATGATACTGGTTTTAGAAAAAGAAAGATGCAGAATCAAGAACAAGAAGCAGGGCAGAAAATGGTTTCTAAGAAACGGCCTAAGAAGAATAAAGGTTCAGTAGGGAAGGACGTAGTAGACAAGCTTGACATGCTAATAGAACAATATAGATCCAAATTCTCACACAAGAGTTCCCAAGAGAATGGAGAGAAAAAACCTTCAAAACAGGTTAGGAAATGGTTCCAATCATAG 2856 0.4093 MGKKNKVKENGGKEHCPSTLFVSNLPYSFSNSQLEETFSEIGPVRRCFMVTQKGSAQHRGFGYVQFAVEEDANRAIELKNGMSVEGRKIGVKHAMPRPPREDRKSKPNKAGTPDDLVKPNGDDVNDSTSLGTEKHVSILKEEVQVPSKQKNSKKPMETKKSALCNDVADDGGGSEKQRVARTVIFGGLKDSDMAEEVHSQAREIGTVCSIKYPLSKKDLEQHGLMQDGCTMDASSVLYTSVKSARVSVAMLHKKVIRGETIWARQLGGEGSKTQKWKLIVRNLPFKAKDTEIRDMFSSAGYVWDVFIPQKSDTGLSKGFAFVKFTCKQDAENAIQKLNGSKFAKRVIAVDWAVPKKIFSSDVNDTRASEKEEQNLSDEDSDEEDVELVDKRSGQGDDSDTNHSSAMVEEGAPPEDNFDEEADIARKVLNNLLGSSSKGTSENNGSMLSKENKESRPDEVVKDADGKVSDDLEKVSGVSKPDISSINNLSNPKGTEEDLQRTVFISNLPFECDNEEVKQRFSGFGEVEYFAPVLHQVTKRPRGTGFLKFKTVEAADTAISAAIAASGTGILLKGRPLKVLKALDKKSAHDKELEKAKNNEVNDHRNLYLAKEGLIVEGTTAAEGVSASDMLKRQELERKKKTKLQSPNFHVSRTRLIIYNLPKSMHEKELKKLCIDAVISRATKQKPLIRQIKFLKNEKNGKVAQERYSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRNAKLQFQQQAPQDDNNGMKNDKPGNKEDHKQDRKRKSREHGEPGKETVVNTNGESGDTLANGKSKRQKGNKKNKRALKENPEALSMKPKNNQNGQKNGGASAEDQNTAPNRRKSGNKDDDTGFRKRKMQNQEQEAGQKMVSKKRPKKNKGSVGKDVVDKLDMLIEQYRSKFSHKSSQENGEKKPSKQVRKWFQS 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00098 951 MobiDBLite consensus disorder prediction 842 866 - -
Viun11g00098 951 SUPERFAMILY RNA-binding domain, RBD 500 673 IPR035979 GO:0003676
Viun11g00098 951 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 354 IPR000504 GO:0003723
Viun11g00098 951 Gene3D - 2 109 IPR012677 -
Viun11g00098 951 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 653 766 IPR000504 GO:0003723
Viun11g00098 951 MobiDBLite consensus disorder prediction 90 111 - -
Viun11g00098 951 SUPERFAMILY RNA-binding domain, RBD 272 356 IPR035979 GO:0003676
Viun11g00098 951 Gene3D - 263 395 IPR012677 -
Viun11g00098 951 FunFam RNA-binding motif protein 28 652 747 - -
Viun11g00098 951 Gene3D - 652 747 IPR012677 -
Viun11g00098 951 CDD RRM1_RBM28_like 19 97 - -
Viun11g00098 951 SUPERFAMILY RNA-binding domain, RBD 18 262 IPR035979 GO:0003676
Viun11g00098 951 MobiDBLite consensus disorder prediction 776 802 - -
Viun11g00098 951 MobiDBLite consensus disorder prediction 432 447 - -
Viun11g00098 951 MobiDBLite consensus disorder prediction 432 496 - -
Viun11g00098 951 MobiDBLite consensus disorder prediction 867 898 - -
Viun11g00098 951 FunFam - 2 130 - -
Viun11g00098 951 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 500 583 IPR000504 GO:0003723
Viun11g00098 951 MobiDBLite consensus disorder prediction 479 496 - -
Viun11g00098 951 SUPERFAMILY RNA-binding domain, RBD 644 752 IPR035979 GO:0003676
Viun11g00098 951 MobiDBLite consensus disorder prediction 763 951 - -
Viun11g00098 951 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Viun11g00098 951 PANTHER RNA-BINDING MOTIF PROTEIN 14B 15 951 - -
Viun11g00098 951 MobiDBLite consensus disorder prediction 135 160 - -
Viun11g00098 951 Gene3D - 488 591 IPR012677 -
Viun11g00098 951 MobiDBLite consensus disorder prediction 805 820 - -
Viun11g00098 951 MobiDBLite consensus disorder prediction 907 945 - -
Viun11g00098 951 MobiDBLite consensus disorder prediction 362 416 - -
Viun11g00098 951 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 502 560 IPR000504 GO:0003723
Viun11g00098 951 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 89 IPR000504 GO:0003723
Viun11g00098 951 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 347 IPR000504 GO:0003723
Viun11g00098 951 CDD RRM4_RBM28_like 653 750 - -
Viun11g00098 951 MobiDBLite consensus disorder prediction 87 160 - -
Viun11g00098 951 MobiDBLite consensus disorder prediction 448 476 - -
Viun11g00098 951 Coils Coil 578 598 - -
Viun11g00098 951 CDD RRM2_RBM28_like 277 353 - -
Viun11g00098 951 SMART rrm1_1 19 92 IPR000504 GO:0003723
Viun11g00098 951 SMART rrm1_1 654 745 IPR000504 GO:0003723
Viun11g00098 951 SMART rrm1_1 277 350 IPR000504 GO:0003723
Viun11g00098 951 SMART rrm1_1 501 579 IPR000504 GO:0003723
Viun11g00098 951 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 267 388 - -
Viun11g00098 951 FunFam Putative RNA binding ribonucleoprotein 429 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00098 Viun-Chr11 616957 624484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00098 22 98 Eukaryotic Initiation Factors Gene Family AT3G11400 36.364 6.35e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00098 K14573 - gmx:100794821 1499.95