Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00097 ATGAGCAATGTTGAAGGAAATGATACACTGAGTACTCTTTATGAGGTTTCATTGAGAGGTAGTGTTTCTGAGTTAGAAACTCTTATTGGAAGAGACCCTCTTCTCCTTCACAGAATTTCCTTAACATCATTCACTGAAACTCCTTTGCACATATCAGCTTTACTTGGCCACCTTGATTTCATAAACTCCCTTCTCACTCAAAAACCTCAACTTGCTCTTGAGACTGACCATTGCAGACGCACCCCTCTTCATCTGGCTTCTGCAGAAGGCCATGTAGAGATTGTTCATGTTTTGCTGCAGAAATGTGAAGATGCATGCTTGATGAGTGACCAAGATGGAAGAATCCCTCTTCATTATGCAGCTATGAGAGGAAGAACAGAGGTTGCAAGACAGTTGATTAGTGGAGCAAAGTCAGAATCTGTGATGGTGTTTGATGGATCAGGAAAAACTGTGTTTCACCTTTGTGTTGAGCACAATCACTTGGAGACTTTGAAGACACTGGTGCAAGTTGGAAATGTCAGAGAGGATTTTCTGAACTCTGGAGACTTTCATCATGGAAATACCATTCTCCATTTGGCTGTTATGTTCAAGCAGATTGAGAGTGTAAGGTACTTGCTCTCAATATCCAAAATAAAAGAAGAAGCAAATATTCAAAACAAGATGGGTTACACTGCTTTGGACATGTTAGATCAGGTTCCAAAAGACATGAGAAGTCTTCAAATAAAACTAATGCTGGTGGATGCTGGATTCAAGAACAATGAAAATAACCAAGTACATCATCCACCATCTGCATCAATCATAGATGTTCCTCCATCAAGAACACAGAATCCAAATGAAAAGTTTTGGAGTAACTCTTTGAAGCGTGTGAACAAGCTCTTACAGCTTAAGAGTGGTAGGTTGGAAGAAATGAGAGGGATGTTGAGTTTGGTGTCTACAATGATCTCAACCGTGACCTTTGGTGTTGTGATGAATCCACCAGGTGGTGATTTAAGTATACATCCGCTGTTACGAATGCAGTATGAAGAAATGTTCACAAGTTTCTTAACGATGAACACTATCTCTTTCATTGCATCACTTGGTGTCACTCTCTTACTTATAAGTGGAGTTCCCTTAAAGAATGAAGTCACAATGGGGCTCTTATCAGTAGGCACAGGTGTCTGTCTAACATTTCTTGTGCTTACTTACATATATGCTGTGCCTTTGAACAAAAATCTGCATTTTGGGGAAACATTTTCTGTGTTGTTTTCTTGGCTTGGACTTGTTGGGGCAATAGTTGTGTTTACCATAATTCGTGTAATTTCTAAGCTAGCGAAAGTTTTGTAG 1323 0.3968 MSNVEGNDTLSTLYEVSLRGSVSELETLIGRDPLLLHRISLTSFTETPLHISALLGHLDFINSLLTQKPQLALETDHCRRTPLHLASAEGHVEIVHVLLQKCEDACLMSDQDGRIPLHYAAMRGRTEVARQLISGAKSESVMVFDGSGKTVFHLCVEHNHLETLKTLVQVGNVREDFLNSGDFHHGNTILHLAVMFKQIESVRYLLSISKIKEEANIQNKMGYTALDMLDQVPKDMRSLQIKLMLVDAGFKNNENNQVHHPPSASIIDVPPSRTQNPNEKFWSNSLKRVNKLLQLKSGRLEEMRGMLSLVSTMISTVTFGVVMNPPGGDLSIHPLLRMQYEEMFTSFLTMNTISFIASLGVTLLLISGVPLKNEVTMGLLSVGTGVCLTFLVLTYIYAVPLNKNLHFGETFSVLFSWLGLVGAIVVFTIIRVISKLAKVL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00097 440 ProSiteProfiles Ankyrin repeat profile. 112 134 IPR002110 GO:0005515
Viun11g00097 440 ProSiteProfiles Ankyrin repeat region circular profile. 185 207 - -
Viun11g00097 440 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Viun11g00097 440 ProSiteProfiles Ankyrin repeat region circular profile. 112 134 - -
Viun11g00097 440 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 13 433 - -
Viun11g00097 440 Pfam Ankyrin repeats (3 copies) 37 101 IPR002110 GO:0005515
Viun11g00097 440 Pfam Ankyrin repeats (3 copies) 112 170 IPR002110 GO:0005515
Viun11g00097 440 SUPERFAMILY Ankyrin repeat 13 228 IPR036770 -
Viun11g00097 440 Pfam Ankyrin repeat 185 206 IPR002110 GO:0005515
Viun11g00097 440 SMART ANK_2a 78 107 IPR002110 GO:0005515
Viun11g00097 440 SMART ANK_2a 112 143 IPR002110 GO:0005515
Viun11g00097 440 SMART ANK_2a 147 176 IPR002110 GO:0005515
Viun11g00097 440 SMART ANK_2a 44 73 IPR002110 GO:0005515
Viun11g00097 440 SMART ANK_2a 185 214 IPR002110 GO:0005515
Viun11g00097 440 ProSiteProfiles Ankyrin repeat profile. 185 207 IPR002110 GO:0005515
Viun11g00097 440 Gene3D - 7 241 IPR036770 -
Viun11g00097 440 ProSiteProfiles Ankyrin repeat region circular profile. 78 101 - -
Viun11g00097 440 Pfam Domain of unknown function 299 398 IPR026961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00097 Viun-Chr11 609406 611373 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00097 20 328 Miscellaneous Gene Families AT4G10720 27.987 4.33e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00097 - - gmx:100796407 491.5