Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00078 ATGAGGAAACCTGATCTGATGGCAAACAAGGACAGAATGAAGGAGAGTAATAAGAGCAAGTTGAGGAAAGGGTTGTGGTCACCTGATGAAGATGAGAAGCTGATAAGGTACATGCTCACAAATGGACAAGGTTGTTGGAGTGACATTGCAAGGAATGCTGGTCTCCAAAGATGTGGCAAAAGTTGTCGTCTTCGTTGGATCAATTACCTCAGACCTGACCTCAAACGTGGTGCATTCTCATCCCAAGAACAGCACCTCATCTTCCATTTGCATTCCATTTTTGGTAACAGGTGGTCTCAGATTGCAGCACGTCTCCCTGGTCGCACGGACAATGAAATAAAGAATTTCTGGAACTCTACATTGAAGAAAAAGATGAAAACTAACACTTCACTGAACAACACCACTGACTCATCAGAATATAATAATAAAGATGTTGTGAATGGGATCATCATGCCCTTTGATGAACATGATGACATCATGAACATCACCATGACCATGGATTCCTCTTCATCCATATCATCCATGCAATTTGACCCTTTTTCCTTGTTGGTAAACAATCACTGTGATATCACTAATGATGTTTCAGAATTTTTTCCCTGCATGGAAGATGGACACCAACTGAATCATGGAACATTGGAACCAAATAACAAAATGGGGTTTCCTTCACTACAAAGTAGAAGAAGCATTGAAAGTGACACTGTTCCAATTGATGTCAAAAACCACAACAACAACCACTTCAATTATGGTTCCTTCGATAACACTCATAAGATTCAAGGCTCCTCCAAGGTTGAGGACTCATTAGGGTTTGGAAATCATGGCCAAGGAGAATTTTATTTGGAGAATTTGATGCAAGACATTACCTCTTTCCCTTTCCTTGATTTTTAA 885 0.4011 MRKPDLMANKDRMKESNKSKLRKGLWSPDEDEKLIRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSSQEQHLIFHLHSIFGNRWSQIAARLPGRTDNEIKNFWNSTLKKKMKTNTSLNNTTDSSEYNNKDVVNGIIMPFDEHDDIMNITMTMDSSSSISSMQFDPFSLLVNNHCDITNDVSEFFPCMEDGHQLNHGTLEPNNKMGFPSLQSRRSIESDTVPIDVKNHNNNHFNYGSFDNTHKIQGSSKVEDSLGFGNHGQGEFYLENLMQDITSFPFLDF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00078 294 Gene3D - 20 76 - -
Viun11g00078 294 SUPERFAMILY Homeodomain-like 21 117 IPR009057 -
Viun11g00078 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Viun11g00078 294 CDD SANT 26 70 IPR001005 -
Viun11g00078 294 MobiDBLite consensus disorder prediction 1 22 - -
Viun11g00078 294 Gene3D - 77 147 - -
Viun11g00078 294 PANTHER MYB DOMAIN PROTEIN 55 15 237 - -
Viun11g00078 294 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Viun11g00078 294 Pfam Myb-like DNA-binding domain 76 120 IPR001005 -
Viun11g00078 294 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Viun11g00078 294 SMART sant 75 123 IPR001005 -
Viun11g00078 294 SMART sant 22 72 IPR001005 -
Viun11g00078 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 70 IPR017930 -
Viun11g00078 294 CDD SANT 78 121 IPR001005 -
Viun11g00078 294 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Viun11g00078 294 FunFam MYB transcription factor 20 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00078 Viun-Chr11 484293 487176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00078 1 294 MYB Transcription Factor Family AT3G08500 45.014 3.61e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun11g00078 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00078 K09422 - gmx:100784755 413.305