Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00076 ATGAATGACGGTAGACAAATGGGGTTGCATTATGTAGACGCAGGGTTTCCTTATGCTGTGAATGAAAACTTTGTGGATTTCTTTCAAGGATTCTCTCATGTGCCCGTCAATTATGCCTTTGCTGGTTCAATGCCTGATCAGGAAAGTGTCTACTGGTCAATGAACATGAATCCCTATAAGTTTGGATTGTCTGGCCCTGGTAGTACATCTTACTATAGTTCTTATGAGGTAAATGGTCATTTGCCGAGAATGGAGATTGAAAGGGCTGAGTGGGAATACCCTTCGACAATTACTGCTGTGGAACCAGCTACAACAGATTCTCCGCCTAGAAGAGATGGAATCACTAGCATGCAGACCATCCCTGAAGAATGCAGTCCAAATCATCTTGAGTCCAACAGTAGTAGCCAGGAACTACTGGATTTGGGAGAGGCAGTTGGGACTCAGAACCGTGGTCTTTCACAAGAACTTATTGATATGCTTCCAACCTCGAAGTACAAATTTGGTAGCTTATTCAAAAGAAAAAATTCTGGGAAAAGGTGTGTAATTTGTCAGATGACATACCGAAGAGGTGACCAGCAAATGAAATTGCCATGCAGCCATGTGTATCATAGTGAATGCATCACCAAGTGGCTCAGCATCAACAAGAAATGTCCTGTGTGCAACACTGAGGTTTTTGGCGAGGAATCAACGCATTAG 696 0.431 MNDGRQMGLHYVDAGFPYAVNENFVDFFQGFSHVPVNYAFAGSMPDQESVYWSMNMNPYKFGLSGPGSTSYYSSYEVNGHLPRMEIERAEWEYPSTITAVEPATTDSPPRRDGITSMQTIPEECSPNHLESNSSSQELLDLGEAVGTQNRGLSQELIDMLPTSKYKFGSLFKRKNSGKRCVICQMTYRRGDQQMKLPCSHVYHSECITKWLSINKKCPVCNTEVFGEESTH 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00076 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 225 IPR013083 -
Viun11g00076 231 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 227 IPR033276 GO:0004842|GO:0016567|GO:0046621
Viun11g00076 231 SUPERFAMILY RING/U-box 174 225 - -
Viun11g00076 231 Pfam Ring finger domain 179 221 IPR001841 -
Viun11g00076 231 ProSiteProfiles Zinc finger RING-type profile. 180 221 IPR001841 -
Viun11g00076 231 SMART ring_2 180 220 IPR001841 -
Viun11g00076 231 FunFam E3 ubiquitin ligase BIG BROTHER 142 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00076 Viun-Chr11 459989 466433 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00076 10 231 C3H Transcription Factor Family AT3G63530 51.055 1.51e-85 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00076 K19045 - gmx:100792734 451.44