Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00070 ATGCTTCTTCTTTCTTATACACATCACACCAATTTTTTCCTTAATTTCTCCCACATCAAACATCATTCACTCACTATGACAGATCCTAAGTCCAACAACATGTTCAATGAATGGTTCAACTTCATGCTCTTCCATCCTCACTACTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTTTCAACCCTACCACCCTCTTTCAAATTACTCAAACAGATTTGGAATTCAATTACAAGGAGCCTCATCTTCTTCTTCTTCATCTTTTTCATCTTCATATGCATATACATATGCATCAGTTCCTCCTCCTTCTCCTTCTCCTTCTTCTCCTCCTCTCATAGAGGCTCTTCCTCTCATCAACAAGATAAGCCTCACAACAAGTGAAGAGCTTCAAGAAAATGAAGGCTCACCAAATGTTGTTGTGGAAGAAGAAGAGAGAGAAGAGGAGAAGGTGGTGGAGAACAATGGTGGTGATGAAGAAACTGTGACTGTTGCCCTACACATAGGGCTTCCCAGAATGGATACTTCTTCTGATCTGGGGTCATCTAGGGTGTCCTCAACCTGTATGGAAATGGGTGAGAAAGAGGAAGTGAACATGATTTCTGAGCACCCTTTGGATAGATTGAACAAGGGTCAGTATTGGATTCCCACCCCTTCACAGATTCTCATTGGTCCTACACAGTTCCCTTGTCCTGTGTGCTCAAAAACCTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAGGGGCCAGATTCTCTGAAAGGAACACAGCCAACAGCTATGCTGAGGCTTCCATGCTTTTGTTGTGCAGCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTGAAGGATTTCAGAACTCTTCAAACACACTACAAGAGAAAGCATGGCATAAAACCCTACATGTGCAGAAAGTGCAGCAAAGCATTTGCAGTGAAAGGTGATTGGAGAACACATGAGAAGAACTGTGGAAAAATATGGTATTGCTTGTGTGGCTCTGATTTCAAACACAAAAGGTCCCTAAAAGATCACATCAAGGCCTTTGGCTATGGCCATGGTGCCTTTGGCATTGATTGCTTGCAAGAAGAAGATGAAGCAGCTTCTGAGATTGAACATGATGGAGAACATTCAATATGA 1164 0.4244 MLLLSYTHHTNFFLNFSHIKHHSLTMTDPKSNNMFNEWFNFMLFHPHYSSSSSSSSSSFQPYHPLSNYSNRFGIQLQGASSSSSSSFSSSYAYTYASVPPPSPSPSSPPLIEALPLINKISLTTSEELQENEGSPNVVVEEEEREEEKVVENNGGDEETVTVALHIGLPRMDTSSDLGSSRVSSTCMEMGEKEEVNMISEHPLDRLNKGQYWIPTPSQILIGPTQFPCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAAGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCSKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAFGIDCLQEEDEAASEIEHDGEHSI 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00070 387 MobiDBLite consensus disorder prediction 124 154 - -
Viun11g00070 387 Pfam C2H2-type zinc finger 226 245 - -
Viun11g00070 387 FunFam Zinc finger protein WIP2 279 361 - -
Viun11g00070 387 FunFam zinc finger protein WIP2-like 225 248 - -
Viun11g00070 387 SUPERFAMILY beta-beta-alpha zinc fingers 294 330 IPR036236 -
Viun11g00070 387 ProSitePatterns Zinc finger C2H2 type domain signature. 228 248 IPR013087 -
Viun11g00070 387 SUPERFAMILY beta-beta-alpha zinc fingers 222 248 IPR036236 -
Viun11g00070 387 SMART c2h2final6 226 248 IPR013087 -
Viun11g00070 387 SMART c2h2final6 310 330 IPR013087 -
Viun11g00070 387 Gene3D Classic Zinc Finger 279 359 - -
Viun11g00070 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 253 IPR013087 -
Viun11g00070 387 MobiDBLite consensus disorder prediction 137 154 - -
Viun11g00070 387 Gene3D Classic Zinc Finger 225 248 - -
Viun11g00070 387 PANTHER ZINC FINGER PROTEIN WIP2 72 382 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00070 Viun-Chr11 396118 398678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00070 26 385 C2H2 Transcription Factor Family AT3G57670 52.250 1.38e-121 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun11g00070 zf-C2H2_6 3.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00070 - - gmx:100794446 546.969