Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00063 ATGACGGACGTTCATCAATTCAATAACATCACTCTCGGAGGCCGTGGAGGCACTAATCCAGGACAGATGAAAGTATACTCTGGTGGAATAGTATGGAAGAGACAGGGCGGTGGTAAATTAATTGAAGTTGATAAATCTGATATAGAGGGGGTCACATTTATGAAGGTTCCAAAGACTAACCAACTTGGTGTTCAAATTAAAGATGGGTTGTACTACAAGTTCACTGGATTTCGTGATCAGGATGTTGCAAGTTTGACCAACTTTTTCCAGAACACTTGTGGAATAACAGTGCGGGAGAAGCAGCTTTCTGTTAGCGGACGAAATTGGGGAGAAGTTGATCTGAATGGAAATATGTTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTGTCGCTAGCAGATGTCTCTCAAACTCAGCTTCAAGGGAAGAATGATGTGATCTTAGAGTTTCACGTGGATGACACAACTGGAGCTAATGAGAAAGATTCACTGATGGAGATAAGTTTCCATATACCAAGTTCCAACACCCAGTTTGTTGGCGATGAAAAAACTCCTCCTGCTGAAGTTTTCCGCAGCAGAATAATGTCTATGGCTGATGTTGGTGCTGGAGGTGAAGATGCTGTTGTTACATTTGAGAGTATTGCGATTCTTACACCAAGAGGACGATACATTGTTGAGTTACACATGTCATTCTTGCGGCTTCAGGGACAGGCTAATGATTTCAAAATCCAATATAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGGGGCTTATTCATGAAGTGTTCACCACAATATTACGTGGCTTGTCTGGTGCCAAAGTGACTAAGCCTGGAAAATTTAGGAGTTGTCAGGATGGTTATGCTGTGAAATCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTACCTAAGCCTCCGACTCTTATTCTTCATGAAGAGATTGACTATGTGGAATTTGAGAGGCATGCTGCTGGTGGTTCCAATATGCATTATTTTGACCTTCTTATCAGACTAAAATCTGAACAAGAACATCTCTTCCGTAATATTCAGAGAAATGAGTACCATAATTTGTATGAATTTATTAGTGCAAAGGGCTTGAAAATTATGAACTTAGGAGATGGCCAACCTACTGCTGGTATAAAGAAGGTTCTGGAGAATGACGATGATGATGCTGTTGATCCACATCTTGAGCGCATAAAAAATGCAGCTGGTGACGATGAAAGTGATGAGGAGGATTCAGATTTTGTTGCTGACAAGGATGACGAAGGTTCTCCTACTGATGATTCTGGAGGAGACGATTCTGATGCCAGTAAGAGTGGCGATGAGAAAGAGAAGCCTGTCAAGAAGGAAATAAAGAAGGACCTGCCTCCTAAGGCATCTACTTCTAAAAAGAAACCAAAAGATGACGAAGATGGAAAAAAGAAAAAACAGAAGAAGAAAAAAGACCCAAATGCACCCAAAAGGGCAATGTCCGGTTTCATGTTCTTTTCTAAATTGGAAAGAGAGAATCTCAAGAAAACTAACCCTGGAATCTCATTTACGGATGTGGGAAGAGTACTTGGCGAGAAATGGAAGAAAATGACAGCGGAAGAGAAGGAACCATACGAGGCAAAAGCACGTGAAGATAAACAACGTTACAAGGATGAAATTAGCGGCTACAAGAATCCCCAACCCATGAATATTGATTCAGCAAATGTTACTGACAGTGCCTAA 1743 0.4114 MTDVHQFNNITLGGRGGTNPGQMKVYSGGIVWKRQGGGKLIEVDKSDIEGVTFMKVPKTNQLGVQIKDGLYYKFTGFRDQDVASLTNFFQNTCGITVREKQLSVSGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPSSNTQFVGDEKTPPAEVFRSRIMSMADVGAGGEDAVVTFESIAILTPRGRYIVELHMSFLRLQGQANDFKIQYSSVVRLFLLPKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYEFISAKGLKIMNLGDGQPTAGIKKVLENDDDDAVDPHLERIKNAAGDDESDEEDSDFVADKDDEGSPTDDSGGDDSDASKSGDEKEKPVKKEIKKDLPPKASTSKKKPKDDEDGKKKKQKKKKDPNAPKRAMSGFMFFSKLERENLKKTNPGISFTDVGRVLGEKWKKMTAEEKEPYEAKAREDKQRYKDEISGYKNPQPMNIDSANVTDSA 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00063 580 SMART Rtt106_2 288 381 IPR013719 -
Viun11g00063 580 Pfam Histone chaperone Rttp106-like 290 379 IPR013719 -
Viun11g00063 580 Gene3D High mobility group box domain 479 574 IPR036910 -
Viun11g00063 580 FunFam FACT complex subunit SSRP1 96 179 - -
Viun11g00063 580 CDD HMG-box_AtSSRP1 493 567 - -
Viun11g00063 580 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Viun11g00063 580 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Viun11g00063 580 MobiDBLite consensus disorder prediction 537 580 - -
Viun11g00063 580 MobiDBLite consensus disorder prediction 566 580 - -
Viun11g00063 580 MobiDBLite consensus disorder prediction 537 560 - -
Viun11g00063 580 SUPERFAMILY HMG-box 483 565 IPR036910 -
Viun11g00063 580 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 496 564 IPR009071 -
Viun11g00063 580 FunFam FACT complex subunit SSRP1 279 387 - -
Viun11g00063 580 Pfam HMG (high mobility group) box 496 564 IPR009071 -
Viun11g00063 580 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Viun11g00063 580 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 257 - -
Viun11g00063 580 CDD PH2_SSRP1-like 282 381 - -
Viun11g00063 580 Gene3D - 279 387 IPR011993 -
Viun11g00063 580 FunFam FACT complex subunit SSRP1 480 573 - -
Viun11g00063 580 Gene3D - 95 179 IPR038167 -
Viun11g00063 580 SMART hmgende2 495 565 IPR009071 -
Viun11g00063 580 SUPERFAMILY PH domain-like 206 380 - -
Viun11g00063 580 MobiDBLite consensus disorder prediction 409 504 - -
Viun11g00063 580 Gene3D - 1 92 IPR011993 -
Viun11g00063 580 Pfam POB3-like N-terminal PH domain 6 97 IPR035417 -
Viun11g00063 580 MobiDBLite consensus disorder prediction 441 487 - -
Viun11g00063 580 FunFam FACT complex subunit SSRP1 1 93 - -
Viun11g00063 580 Gene3D - 199 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00063 Viun-Chr11 371800 377969 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00063 492 564 ARID Transcription Factor Family AT1G04880 41.096 2.90e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Viun11g00063 POB3_N 4e-22 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00063 K09272 - rcu:8276028 847.425