Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00058 ATGAGCATTGTGTATAGTCATGCTGTGAAGTATTCCCCAGAAGTGACAAGGATGAAGCCAGAAATGGATTCAAATATTGGTCAACACTGTCACCAACAAAATTCTGGGCTAATGAGAAGTGACCATAATCATCATCATCAGCATCAGCATCATCAGCAGCAGCAGCAGAACTATCCTCCCTCTACAAGTTCTGAAATGGAGACCATGTTGGCCAAGTTGATTTCTTCCAATGATTCTGAGACTCTGCAAGAGTTTGGAGGGAAGCCGGTGAAGGAAGAAGCAGGTGACAGAGTTTCACAGCCACCACAACAACACAGTGGCTACTCTTTCGGTTCTTCACCTCAGATAATGTACCAAACTCAGCAATTTCAAGGCTTTTCTATGCCAAATGGTTCTTTGAGACCTGCAGGGAATGGTTTTGATGGCTCATTCAGTGCAGTGAATTCCATGGCTTCTCAGAATTCCACACAAACCAAAATGGTTTCTTCCACCAATTGCTCCAATCTCATTAGGCAGAAGAGTTCCCCTGCAGGGTTTTTCTCCAATTACTCAGTTGATAACACAATGAGAGATGTGGCAAGTTTTAGGGGATGTGATGTATCAAATGGACAAGCTATTACATCCACTAGTGGATTGCATGGTACTTTGAACTTCTCTTCAAGGCCATCATCCTCTTGCTCCACCAGAATGCCACAGATTGCTGAAAATGGAAATGAGGGTGTGGAACCAAATTGTGTTGAAAGCAGAAACCTGAGGAACATGCCTAGTTTCACCCCTGATTTCTGGGATGGTTCTGCCATCAGTGCCTCCAGAACAGCCAGTAACAACTGTGAAATATCATTTTCCACTTCAAATGCAATGGATATTCAGGATGAAGATTTTGGATATCAGAAACTTGGTTTGACCCATCATTTGAGTCTTCCTAGCTCTTCTACCAGAATGGCTGCTACCATGGAGAAGTTATACCAAACTCAAGGAAATGTTCCATGCAAAATTCGTGCCAAGAGAGGTTTTGCCACTCACCCAAGAAGCATTGCTGAAAGGGAAAGAAGAACAAGAATCAGTGCAAGAATCAAGAAATTGCAAGACCTTTTCCCAGACAAGCAAACAAGCACAGCTGATATGTTGGATTTGGCTGTTGAGTACATCAAAGATCTGCAGAAACAAGTTAAGATTCTGGCTGACACTAGGGCAAAGTGCACTTGTACAAGTAACCAGAAGCAATAA 1227 0.4279 MSIVYSHAVKYSPEVTRMKPEMDSNIGQHCHQQNSGLMRSDHNHHHQHQHHQQQQQNYPPSTSSEMETMLAKLISSNDSETLQEFGGKPVKEEAGDRVSQPPQQHSGYSFGSSPQIMYQTQQFQGFSMPNGSLRPAGNGFDGSFSAVNSMASQNSTQTKMVSSTNCSNLIRQKSSPAGFFSNYSVDNTMRDVASFRGCDVSNGQAITSTSGLHGTLNFSSRPSSSCSTRMPQIAENGNEGVEPNCVESRNLRNMPSFTPDFWDGSAISASRTASNNCEISFSTSNAMDIQDEDFGYQKLGLTHHLSLPSSSTRMAATMEKLYQTQGNVPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPDKQTSTADMLDLAVEYIKDLQKQVKILADTRAKCTCTSNQKQ 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00058 408 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 85 402 - -
Viun11g00058 408 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 343 398 IPR036638 GO:0046983
Viun11g00058 408 MobiDBLite consensus disorder prediction 25 66 - -
Viun11g00058 408 FunFam Transcription factor bHLH130 family 339 406 - -
Viun11g00058 408 Gene3D - 340 407 IPR036638 GO:0046983
Viun11g00058 408 SMART finulus 344 392 IPR011598 GO:0046983
Viun11g00058 408 MobiDBLite consensus disorder prediction 89 112 - -
Viun11g00058 408 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 386 IPR011598 GO:0046983
Viun11g00058 408 MobiDBLite consensus disorder prediction 52 66 - -
Viun11g00058 408 Pfam Helix-loop-helix DNA-binding domain 344 387 IPR011598 GO:0046983
Viun11g00058 408 CDD bHLH_AtbHLH_like 343 393 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00058 Viun-Chr11 337187 341092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00058 164 404 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 40.230 1.48e-41 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun11g00058 HLH 2.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00058 - - gmx:100795896 626.32