Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00052 ATGGTTCGCTCACATGGCGTCACTCTCATTAATCGCCTTGCTCGTCGATCTTCCTGTGGTGCCAACAATTCTGTTTATCAAGCAGTGTTCCAAAGGGGTTATAGGACACTGAACTCTGGGCCTTTCAATCCATCCAGAGTTACTGTTGGAGGTGGGGTTAATTTGAAGAAATGGTTACTATTGGGCTCTGCAAATAAATATTGGGAGGCATCTAGATTAATTCATGGCTCAGCATTTTTGGCAAGAGACTATTATGATATTCTTGGTGTGAGTAAGAACGCAAGTTCTTCCGAAATAAAGAAAGCTTACTATGGGCTTGCAAAAAGGCTCCATCCAGATACAAACAAAGATGATCCCGAAGCCGAAAAGAAGTTTCAAGAAGTCTCGATAGCATATGAGGTTTTAAAGGACGAGGAAAGGCGACAACAGTATGATCAGCTTGGTCATGATGCTTATGTAAACCAACAAAGCACTGGTTTCGGTGGTGGTGAGGGTGGCTTCAATCCCTTCGAGCAGATATTCCGTGATCATGATTTTGTAAAGAGCTTCTTCCATCAGAATATTGGTGGAGAGGATGTGAAGACTTTTGTTGAGCTATCTTTTATGGAAGCTGTACAAGGGTGCACCAAAACTATAACATTTGAAACAGATATGCTTTGTAATTCTTGTGGTGGGAGTGGTGTTCCTCCTGGTACAAGACCTGAAACTTGTAAGCGATGTAAAGGATCAGGAGTGTTATTTGTACAAGCCGGCATATTCAGAATGGAGAGTACCTGTGGTACCTGCAAGGGAACTGGAAAAATTGTATCGAATTTCTGCAAGTCTTGCAGGGGTCAGAAGGTTGTCAAAGGAACGAAGTCGGTCAAGTTGGATATTATGCCTGGGATAGACACCAATGAGACCATAAAGGTTTTCGGAGGCGGTGGAGCAGATCCTGATAGAGATCATCATGGTGATCTCTATGTTACTATCAAGGTTAGAGAAGACCCTGTTTTTCGCAGAGAAGGATCTGATATTCACGTAGATGCTGTTTTAAGTATCACTCAGGCGATTTTGGGGGGAACTATTCAAGTCCCGACTCTTACTGGAGAAGTTGTACTTAAGGTTCGCCCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAGGGATCAAGACAAAAAATTCTTACACATTTGGTGATCAATATGTTCATTTTAATGTCAATATCCCAACAAACCTGACTCAGAGACAACGAGAGTTGATTGAAGAGTTTGCCAAGGAAGAGCAAGAGGAATTTGATAAACGGAGAAGTGCTTCAGCTTCTGGTTGA 1317 0.4237 MVRSHGVTLINRLARRSSCGANNSVYQAVFQRGYRTLNSGPFNPSRVTVGGGVNLKKWLLLGSANKYWEASRLIHGSAFLARDYYDILGVSKNASSSEIKKAYYGLAKRLHPDTNKDDPEAEKKFQEVSIAYEVLKDEERRQQYDQLGHDAYVNQQSTGFGGGEGGFNPFEQIFRDHDFVKSFFHQNIGGEDVKTFVELSFMEAVQGCTKTITFETDMLCNSCGGSGVPPGTRPETCKRCKGSGVLFVQAGIFRMESTCGTCKGTGKIVSNFCKSCRGQKVVKGTKSVKLDIMPGIDTNETIKVFGGGGADPDRDHHGDLYVTIKVREDPVFRREGSDIHVDAVLSITQAILGGTIQVPTLTGEVVLKVRPGTQPGQKVVLKKKGIKTKNSYTFGDQYVHFNVNIPTNLTQRQRELIEEFAKEEQEEFDKRRSASASG 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00052 438 Gene3D DnaJ domain 80 192 IPR036869 -
Viun11g00052 438 FunFam Chaperone protein dnaJ 1, mitochondrial 327 433 - -
Viun11g00052 438 CDD DnaJ_zf 220 280 IPR001305 GO:0031072|GO:0051082
Viun11g00052 438 Gene3D - 193 322 - -
Viun11g00052 438 SMART dnaj_3 82 140 IPR001623 -
Viun11g00052 438 PRINTS DnaJ domain signature 120 140 IPR001623 -
Viun11g00052 438 PRINTS DnaJ domain signature 85 103 IPR001623 -
Viun11g00052 438 PRINTS DnaJ domain signature 140 159 IPR001623 -
Viun11g00052 438 PRINTS DnaJ domain signature 103 118 IPR001623 -
Viun11g00052 438 Gene3D - 220 280 - -
Viun11g00052 438 Gene3D - 327 435 - -
Viun11g00052 438 Pfam DnaJ central domain 220 280 IPR001305 GO:0031072|GO:0051082
Viun11g00052 438 SUPERFAMILY HSP40/DnaJ peptide-binding domain 190 328 IPR008971 GO:0006457|GO:0051082
Viun11g00052 438 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 207 283 IPR036410 -
Viun11g00052 438 ProSiteProfiles Zinc finger CR-type profile. 207 285 IPR001305 GO:0031072|GO:0051082
Viun11g00052 438 ProSitePatterns Nt-dnaJ domain signature. 125 144 IPR018253 -
Viun11g00052 438 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 31 429 - -
Viun11g00052 438 FunFam Molecular chaperone DnaJ 212 285 - -
Viun11g00052 438 Hamap Chaperone protein DnaJ [dnaJ]. 80 434 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Viun11g00052 438 SUPERFAMILY HSP40/DnaJ peptide-binding domain 331 417 IPR008971 GO:0006457|GO:0051082
Viun11g00052 438 CDD DnaJ_C 191 409 - -
Viun11g00052 438 Pfam DnaJ domain 83 145 IPR001623 -
Viun11g00052 438 SUPERFAMILY Chaperone J-domain 82 185 IPR036869 -
Viun11g00052 438 FunFam Chaperone protein dnaJ GFA2, mitochondrial 80 192 - -
Viun11g00052 438 ProSiteProfiles dnaJ domain profile. 83 148 IPR001623 -
Viun11g00052 438 Pfam DnaJ C terminal domain 196 406 IPR002939 -
Viun11g00052 438 CDD DnaJ 83 137 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00052 Viun-Chr11 285086 292416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00052 82 145 C2H2 Transcription Factor Family AT1G74250 42.029 2.81e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00052 K03686 - gmx:100799735 791.956