Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00048 ATGTTGTTCGATGAATCAAAATTCAAAGGTTGGTTGAGAGCTACGATGGCTTCTCTAACTTTTCCTTATTCGTACGTTGTTCTGCTAACCGTTCTCCTCTTTCTCTCATCTTTGTTCAGTGCCGCTACTTCTTCAAACTGTGGTGATTCTAGTGTGAACTTAACCTCCTCTCTGAACACCAATGATTCATCAACGACATGGAATTCACCTTCTGGTCACTTTACCTTTGGTTTCCAAACAGTTGTATACGACAACAAGGAGTTCATGTACGTGCTCGGAGTTTGGTTTGCCAAAGACCCCAACAAAACCATGGTATGGTATGCAAAGCCAGAAAACGAAAAATCTCATCTTTTTCCATTAGGGTCAACGGTGAATGTCACAGACAAAGGAATTGTAGTGTATGATCCAAAGGGTCGTGACATGTTGTGGCAACGTCCAGAAAACAACACTGTTGCTTTGGTATCGTGTGCTTCTGTGCTGGACAGTGGAAGTTTTGAGCTTGTGGGTGAGGATGGGAAGAAGGTTTGGGAGAGCTTTGAGGAACCCACAGACACTATTTTGCCTGGTCAGAATCTGTCTAGGCCTAGAAGCTTCAGAGCACGCCAATCTGATGCGAGTTTTGATGATGGGAACTTTGAACTCAGTTGGCAGGGTGATAGCAACTTGGTTCTTTACTATTATCCAAAATCAAGCAACGATGATGGTGAAAGAGCTGAGTCTCCAACACACGAGGCTTATTGGGCCACTGGAACTGTCGGAACTGAATCACAGCTTTTCTTTGACGAGTTTGGACACATGTACATAAAAAATGACACGGGCACGGTGCTCAGTGATATCACAAATGGTGGATCTGATGAGTTCTTTTACATGGCGAGAATTGACCCTGATGGGGTTTTCAGACTATATCGCCACCCAAAAGATGAGAACAAAGGTGTTGCTAATAGCTGCAGTGCAAGGTGGTGGAGTGTGGAGCAAAAGCATCCAGATGATATTTGCCTTTCCTTCACGAAGCAAACTGGGAATGTTATCTGTGGTTTTAACAGCTACTGTGTTAGCATCGGTGACAGGACCAATTGTGAGTGCCCAGAACATTATTCTCCTTTCGAACATGACAATCTCATAGGTTGTAGACCAGATTTTCCACTGCCCAGTTGCAACAGAGACGGGTGGGAGCAGAATAAGGATCTTGTAGATTTCAACGAGTACACCAATCTGGACTGGCCTCTCTCGGATTATGACAGATTAATAGAAACTGGAATGAACAAGAGTTTGTGCAGACAAAGGTGCCTTGAAGATTGCTTTTGTGCTGTGGCCATATACGGAGAAGGAAGTTGTTGGAAGAAGAAGTATCCTCTGAGCAATGGAAGAAAACATGGTAATGTGACTAGAATAGCTCTTGTCAAGGTGCCTAAAACAGATTTAAACAACGGTGGAAAAGAACAGACCACACTTGTTCTTGTCGTGTCAATACTCCTAGGAAGCTCAGTGTTCATCAATGTTGTCCTACTTGTTGCTTTGTTTGCTGCTTTTTTCATTTTCTACCACAAGAGGCTTTTGAACAGTGAAAACCTATCAGTTGGTACGGTGAGTCACTTCACCTACAAGGAGCTCGAAGAAGCAACCACAGGGTTCAAACAAATGCTGGGTCGAGGTGCTTTTGGGAAAGTTTATAAAGGGGTGTTGAGATCAAGATCAAACACGAGTAGGTACGTTGCAGTGAAGAGGCTTGACAAGGTTGTGCAAGAAGGTGAGAAGGAGTTCAAAACAGAAGTGAGTGTGATTGGACAAACACACCACAGAAACTTGGTTCGTCTGTTTGGTTATTGTGATGAAGGGGAGCATCGTCTTCTGGTGTACGAGTACATGAGCAATGGTTCATTGGCTGGTTTTGTGTTTGGGATCTCAAGGCCTCATTGGAACCAAAGAGTGCAAATTGCTCTGGGGATTGCAAGAGGGCTAACATATTTGCATGAAGAGTGCAGCACTCAGATAATTCACTGTGACATAAAGCCTCAGAATATACTCTTGGATGAGTTTTTCACTCCAAGGATTGGTGATTTTGGGTTGGCGAAGTTGTTGCTGGCCGAGCAAAGTAAAGCTGCTAGAACTGGTTTGAGAGGGACAATTGGTTACTTTGCACCAGAATGGTTTAGGAAAGCTACGATCACAACGAAAATAGATGTTTACAGCTTTGGAGTGGTGCTGTTGGAGATCATATGTTGCAAGTCAAGTGTTGGTTTTGCGTTGGAGAGTGAAGAAGAGGCACTCATAGATTGGGCTTATCGGTGTTATAGCCAAGGGAAGGTGGGTAAAATGGTGGAGAATGATGAGGAGGCTGAGAATGATGTGAAGAGAGTGGAGAAGCATGTGATGGTAGCAATTTGGTGCATTCAAGAGGATCCTTCACTGAGACCTTCCATGAAAAAGGTTACACAGATGCTTGAGGGTGTTACACCAGTTTCTGTGCCCCCTTGCCCTTCTATCTTCACTTCATCTTCTTTTTAA 2505 0.4379 MLFDESKFKGWLRATMASLTFPYSYVVLLTVLLFLSSLFSAATSSNCGDSSVNLTSSLNTNDSSTTWNSPSGHFTFGFQTVVYDNKEFMYVLGVWFAKDPNKTMVWYAKPENEKSHLFPLGSTVNVTDKGIVVYDPKGRDMLWQRPENNTVALVSCASVLDSGSFELVGEDGKKVWESFEEPTDTILPGQNLSRPRSFRARQSDASFDDGNFELSWQGDSNLVLYYYPKSSNDDGERAESPTHEAYWATGTVGTESQLFFDEFGHMYIKNDTGTVLSDITNGGSDEFFYMARIDPDGVFRLYRHPKDENKGVANSCSARWWSVEQKHPDDICLSFTKQTGNVICGFNSYCVSIGDRTNCECPEHYSPFEHDNLIGCRPDFPLPSCNRDGWEQNKDLVDFNEYTNLDWPLSDYDRLIETGMNKSLCRQRCLEDCFCAVAIYGEGSCWKKKYPLSNGRKHGNVTRIALVKVPKTDLNNGGKEQTTLVLVVSILLGSSVFINVVLLVALFAAFFIFYHKRLLNSENLSVGTVSHFTYKELEEATTGFKQMLGRGAFGKVYKGVLRSRSNTSRYVAVKRLDKVVQEGEKEFKTEVSVIGQTHHRNLVRLFGYCDEGEHRLLVYEYMSNGSLAGFVFGISRPHWNQRVQIALGIARGLTYLHEECSTQIIHCDIKPQNILLDEFFTPRIGDFGLAKLLLAEQSKAARTGLRGTIGYFAPEWFRKATITTKIDVYSFGVVLLEIICCKSSVGFALESEEEALIDWAYRCYSQGKVGKMVENDEEAENDVKRVEKHVMVAIWCIQEDPSLRPSMKKVTQMLEGVTPVSVPPCPSIFTSSSF 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00048 834 Gene3D Transferase(Phosphotransferase) domain 1 622 821 - -
Viun11g00048 834 ProSitePatterns Serine/Threonine protein kinases active-site signature. 664 676 IPR008271 GO:0004672|GO:0006468
Viun11g00048 834 PIRSF SRK 20 833 IPR024171 GO:0004674
Viun11g00048 834 SUPERFAMILY alpha-D-mannose-specific plant lectins 203 305 IPR036426 -
Viun11g00048 834 SMART serkin_6 542 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00048 834 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 58 826 - -
Viun11g00048 834 Gene3D - 182 326 IPR036426 -
Viun11g00048 834 SUPERFAMILY Protein kinase-like (PK-like) 525 815 IPR011009 -
Viun11g00048 834 ProSiteProfiles Protein kinase domain profile. 542 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun11g00048 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 622 822 - -
Viun11g00048 834 FunFam S-receptor-like serine/threonine-protein kinase 515 621 - -
Viun11g00048 834 ProSiteProfiles Bulb-type lectin domain profile. 49 180 IPR001480 -
Viun11g00048 834 CDD PAN_AP_plant 391 470 - -
Viun11g00048 834 CDD STKc_IRAK 548 816 - -
Viun11g00048 834 ProSitePatterns Protein kinases ATP-binding region signature. 548 574 IPR017441 GO:0005524
Viun11g00048 834 Pfam Protein tyrosine and serine/threonine kinase 544 814 IPR001245 GO:0004672|GO:0006468
Viun11g00048 834 SMART blect_4 58 182 IPR001480 -
Viun11g00048 834 SUPERFAMILY alpha-D-mannose-specific plant lectins 90 251 IPR036426 -
Viun11g00048 834 Pfam D-mannose binding lectin 103 196 IPR001480 -
Viun11g00048 834 Gene3D - 49 181 IPR036426 -
Viun11g00048 834 Gene3D Phosphorylase Kinase; domain 1 514 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00048 Viun-Chr11 255110 258059 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00048 489 818 Receptor kinase-like Gene Family AT5G45780 40.290 9.65e-71 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Viun11g00048 PK_Tyr_Ser-Thr 2.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00048 - - vra:106753716 1445.64