Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00038 ATGACGACTCGAATTGCACCTGGTGTGGGAGCCAATTTGCTCGGCCAACATGCCGCTGAGAGGAATCAAGATGCCACTGCTTATGTCGGCAATCTCGACCCTCAGATAAGCGAAGAATTATTGTGGGAGTTGTTCGTTCAAGCGGGTCCAGTGGTTAATGTCTATGTCCCGAAGGACAGAGTGACCAACCAACACCAGGGTTATGGGTTTGTTGAATTCCGGAGTGAAGAAGATGCTGACTATGCCATCAAAGTTCTTAACATGATCAAGCTTTATGGGAAACCGATCCGTGTGAATAAGGCATCCCAAGATAAAAAGAGCTTGGATGTTGGTGCAAACCTTTTCATTGGCAATCTTGATCCTGATGTAGATGAGAAGCTCTTGTACGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATCATGAGAGATCCCGAGACAGGAAATTCCCGTGGTTTTGGCTTCATCAGCTATGATTCATTTGAGGCTTCTGATTCTGCCATTGAGGCGATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTATAAGAAAGACACTAAGGGTGAAAGGCACGGTACCCCGGCAGAAAGAGTTTTGGCTGCAAGTAATCCAACTGCACAGAAGAGCAGGCCCCATACTTTATTTGCCAGTGGACCTCCAACACTTCCCAGTGTTCCTCAGGCTAATGGGGTTGCTCCAGTGCCTCCCCGTCCCTTTGCTAATGGGGTCGCTCCTGGTTCAATTCCCGCCCTTCGTCCACCTCCGCCTCAAGCTGCTGCATTCCAGCCTATGCAAGTACCTGGACAACCAACCTGGCACCAGCAACAGCCCGGCCAACCAATGTTACCTCCTGCAATGCCACCTCCACCTCAAGTTCAGCAGTTCAGACCACCACACCCTGGTATGCAGCAGATGCCACCACCTCCACAAGCTCCTCCCAGGCCTCTTCCACCACCAGCAGTAATGGGAGGTCAGCCACCACCTGTCTGGCGTCCACCACCACCACCCCAGCATCAGGGTGGACGGCCTATGCCATACCCTCAGTCCATGCCGCCGCCACCACCTCCTCAGTAA 1098 0.5064 MTTRIAPGVGANLLGQHAAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPTLPSVPQANGVAPVPPRPFANGVAPGSIPALRPPPPQAAAFQPMQVPGQPTWHQQQPGQPMLPPAMPPPPQVQQFRPPHPGMQQMPPPPQAPPRPLPPPAVMGGQPPPVWRPPPPPQHQGGRPMPYPQSMPPPPPPQ 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00038 365 CDD RRM1_SF3B4 28 100 IPR034158 -
Viun11g00038 365 Gene3D - 16 110 IPR012677 -
Viun11g00038 365 FunFam Splicing factor 3b subunit 4 16 108 - -
Viun11g00038 365 CDD RRM2_SF3B4 111 193 IPR034159 -
Viun11g00038 365 MobiDBLite consensus disorder prediction 288 365 - -
Viun11g00038 365 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 358 - -
Viun11g00038 365 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Viun11g00038 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Viun11g00038 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Viun11g00038 365 MobiDBLite consensus disorder prediction 193 365 - -
Viun11g00038 365 FunFam splicing factor 3B subunit 4 109 200 - -
Viun11g00038 365 Gene3D - 111 200 IPR012677 -
Viun11g00038 365 MobiDBLite consensus disorder prediction 237 269 - -
Viun11g00038 365 MobiDBLite consensus disorder prediction 208 232 - -
Viun11g00038 365 PRINTS Proline rich extensin signature 313 330 - -
Viun11g00038 365 PRINTS Proline rich extensin signature 285 301 - -
Viun11g00038 365 PRINTS Proline rich extensin signature 232 244 - -
Viun11g00038 365 PRINTS Proline rich extensin signature 335 360 - -
Viun11g00038 365 PRINTS Proline rich extensin signature 257 278 - -
Viun11g00038 365 PRINTS Proline rich extensin signature 212 228 - -
Viun11g00038 365 SMART rrm1_1 26 99 IPR000504 GO:0003723
Viun11g00038 365 SMART rrm1_1 113 187 IPR000504 GO:0003723
Viun11g00038 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Viun11g00038 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00038 Viun-Chr11 220185 226049 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00038 16 98 Eukaryotic Initiation Factors Gene Family AT4G34110 37.349 1.71e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00038 K12831 - gmx:100791039 566.229