Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00023 ATGTGTAGTGGATGCAAGTTTTCGGCAGAAGAAGAGAGATTGGTGATGGAAATGCAGGCACAGTTTGGAAACAAATGGGCCAAAATTGCAACGTATTTGCCGGGGAGAACGGACAATGATGTGAAAAACTTTTGGAGCAGTCGGAGAAAAAGGTTGGAGAGGATGTTGCAGAAGCCACCAACGTTAAAGTTGCAGAAAAACAAGGGAAAAACTCCTCTTACTCAAGTGCTAGTGGATAAGGTTCCTCCATGCAGTTCAAACCAGGTGGAGGAAAACCTTTGTTACACTACTTCCTACGTGGGAAACACCGAGGTGTTCGAGATGATCAACCTTCAAGATTTGATAAAGCCAAACTATGAACAGATGGAAAATGATTACTTCAGTGGTGTTGAGGTTGATGCCACCCCACTTCACACAGTACCATCGTTTGAGTCTTCATCAGGGTACAACTTCCCTCTGCTCCCTGAGCCACTAATCGACTTTCCACTCTTCCCAGAGTGCCAGGACCTTGTTCCAGAGACCTTTGATCCAAATTTTATTGATGGGTTCGACCAGAAGAAATTTTCAGAATGTGTATGCAGCCAGAAGCTTGGGACTGGGTTGCCAACTCTTGGATTGGAGGAAAATTCTCAAATTACAACTTCAAATGTCTTATTCAAGGACTTCCCAAGTGAGATTTTTGAATACTTTGAGCACATTCCAACCTCAACAGAACAATGA 720 0.4347 MCSGCKFSAEEERLVMEMQAQFGNKWAKIATYLPGRTDNDVKNFWSSRRKRLERMLQKPPTLKLQKNKGKTPLTQVLVDKVPPCSSNQVEENLCYTTSYVGNTEVFEMINLQDLIKPNYEQMENDYFSGVEVDATPLHTVPSFESSSGYNFPLLPEPLIDFPLFPECQDLVPETFDPNFIDGFDQKKFSECVCSQKLGTGLPTLGLEENSQITTSNVLFKDFPSEIFEYFEHIPTSTEQ 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00023 239 Gene3D - 6 75 - -
Viun11g00023 239 FunFam Transcription factor GAMYB 5 73 - -
Viun11g00023 239 Pfam Myb-like DNA-binding domain 6 46 IPR001005 -
Viun11g00023 239 CDD SANT 6 45 IPR001005 -
Viun11g00023 239 SMART sant 3 51 IPR001005 -
Viun11g00023 239 PANTHER TRANSCRIPTION FACTOR DUO1 3 238 - -
Viun11g00023 239 ProSiteProfiles Myb-like domain profile. 6 49 IPR001005 -
Viun11g00023 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Viun11g00023 239 SUPERFAMILY Homeodomain-like 6 53 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00023 Viun-Chr11 193302 194283 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00023 1 57 MYB Transcription Factor Family AT3G60460 75.439 4.61e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun11g00023 Myb_DNA-binding 2.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00023 K09422 - gmx:100793689 379.022