Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00022 ATGTCTGAAGGCTATTCCTGTGGCTGCTCCGACTCCGACTCTTCGTGCGGCTGTTGGTCCACCGCCGCCAGCGCCGCCGCCGCCACCAGATCTGAGGCTTCAACCGAACTCAGACTCTACAGAGCCTTCATCTTCTGTGTCCCCATCTTCTTCACTCTCATTCTCCTCTTTCTCTTCTACCTCTTCTACCTCCGACCGCGAACCAGGCTCCATTGGATCACCAACTTTGGTCTTCCCAACAACGACGACGACGATCACAACCACAATGCCATCTCCACTGTTGAATTGGGCTTGAACAAGGAACTCAGAGAGATGTTGCCCATTATTGTCTACAAGGAAAGCTTCTCTGTCAAAGATACCCAATGCTCAGTATGCCTTTTGGACTACCAGTCAGAGGATAGGCTTCAACAGATTCCTGCATGTGGCCACACTTTTCATATGAGCTGCATTGATCTTTGGCTTGCCACCCACACCACCTGCCCTCTCTGCCGCTTCTCCTTACTGACCATAGCTAAATCTTCCACACAGACATCTGATATGCAGACACAGTCACAGAACAATGAAGAAGCACAAGCAGTGGAATTATCTGAATCAAGATCTACTGTGCATACAGAAACCACTGTCCTCCGCAATGTCTCTGGAGAAGTTGCAATCAGCGCTCCTTGCATTGATGTTGAAGGGCAAAATGAGCAAGACAATCAATAA 705 0.4922 MSEGYSCGCSDSDSSCGCWSTAASAAAATRSEASTELRLYRAFIFCVPIFFTLILLFLFYLFYLRPRTRLHWITNFGLPNNDDDDHNHNAISTVELGLNKELREMLPIIVYKESFSVKDTQCSVCLLDYQSEDRLQQIPACGHTFHMSCIDLWLATHTTCPLCRFSLLTIAKSSTQTSDMQTQSQNNEEAQAVELSESRSTVHTETTVLRNVSGEVAISAPCIDVEGQNEQDNQ 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00022 234 FunFam RING-H2 finger protein ATL7 88 169 - -
Viun11g00022 234 PANTHER RING-H2 FINGER PROTEIN ATL16 32 199 IPR044600 GO:0016567|GO:0016740
Viun11g00022 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 170 IPR013083 -
Viun11g00022 234 SUPERFAMILY RING/U-box 106 170 - -
Viun11g00022 234 SMART ring_2 122 163 IPR001841 -
Viun11g00022 234 Pfam Ring finger domain 121 164 IPR001841 -
Viun11g00022 234 CDD RING-H2_EL5-like 121 164 - -
Viun11g00022 234 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Viun11g00022 234 MobiDBLite consensus disorder prediction 176 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00022 Viun-Chr11 184538 188349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00022 27 200 C3H Transcription Factor Family AT4G10150 50.562 6.12e-58 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g00022 K19039 - gmx:100794211 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g00022 11 184538 188349 Viun11g00022 11 184538 188349 ECH