Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02820 ATGTTTGACTCTGGTTACAAGTCACAGTATATTGGAGGCCAGAAGGAGAAGTTCGTAAGGTTGGATGATCTGGATTCGAATTTGTCTTATCAATCAAGCTCAAGTGGGATGAAAAAATTAAGATTCAATTTAGATTCTCTGCCACTTCCTGGTCGAGGAAGAAAAAGGGCATCGAAATCGTTTAGGCTAGGAGTGAAGAAGGGTTCGGATGGACTAAAAACATTTGGAAGATCGCTGAAGAGTGGGGTGACAACATGGGCAGTGTTCCCTGAAGACCTTAAAGTTTCAGAGAAAAAAGTGTTCGACCCTCAAGACAAGAACCTTCTGTATTGGAACAAGTTTTTTGAGATTCTATGCATTTTTTCTGTGGCTTGTGATCCCTTCTTCTTCTATCTTCCTTATTTCAACCACAAATCATTTTGCCTCGCCATAGATAATGAGCTAGCAAGTTTTGCTGTCACATTGAGAACAATATGCGACGCCATTTATCTCATCCGCATAAGCTTTCAGTTCAACACTGCTTACATTGCACCATCATCTCGGGTATTTGGACGAGGTGAACTTGTCATAGATCCTACAAAGATTGCCAAGAGATACTTACGACGTTACTTCCTCATTGACTTCTTTTCTGTGCTCCCTATACCACAGATTGTAGTGTGGAAATATCTTTACAGATCAGGGCGTGTAGAGGTTCTGGAAACAAAAACGTTACTGCTGAGAATTGTGATTCTGCAATATTTTCCGAGATTTATACGTTTTCTACCTTTAGCTTCTGAAGTTAAAAAGACAGCTGGTGTTTTTTCTGAGAACGCACTGCTCGGGGCCATGTACTATTTGATCTGGTATATGCTTGCTAGTCACATAACTGGCTCTTGCTGGTACTTACTATCCATTGAACGTAATGACACCTGTTGGAAGAATGCTTGTAGAGCAGTTGAAGGGTGCAATACACATTTCTTGTACTGTGCGAATTCCAACAAGCATATGCCAGGGTATGATAGTTGGAGAAACGTTAGCGAAACTGTTCTGAAAAGTCAGTGCTATGTGGAGGATGGTTCCTCAGAATTTAGCTATGGAATCTTCTCTCAAGCTATAGAGTCTGATATTGTGGCTTCCATAGAAGTTTTTCCTAAGTTCTGTTACTGTTTATGGTGGGGTCTTCAAAACTTGAGTACACTTGGTCAGGGGCTTCTAACCAGTACATACCCTGCAGAGGTTATGTTTTCCATAGTAATAGCTATTATGGGGCTTATCCTTTTTGCTCTTCTGATTGGAAACATGCAGACCTACCTTCAATCAATGTCAGTTCGTCTTGAGGAAATGAGGATCAAAAGACGTGACTCTGAGCAATGGATGCATCATCGTTTGCTTCCCCCAGAACTAAGGGAAAGAGTGAGACGCTATGATCAATACAAGTGGCTGAACACCCGTGGTGTAGATGAAGAGAGCATAGTTCAGAGTCTTCCAAAAGATCTCAGGAGAGATATCAAACGGCATCTTTGTTTGAATTTAGTCAGAAGGGTTCCTCTCTTTGCCAACATGGATGAGCGTTTGCTTGATGCTATATGTGAGAGATTGAAGCCTAGTTTATATACAGAGGGAACTTACATAGTGAGGGAAGGGGACCCAGTTAATGAGATGCACTTCATCATACGTGGGCGTCTAGAGAGTGTGACCACAGATGGTGGAAGAAGTGGGTTTTTCAACAGAGGTCTTCTGAAGGAAAATGACTTCTGTGGAGAGGAGCTACTAACGTGGGCATTGGACCCAAAATCTGGTTCTAACTTACCTTCATCAACAAGAACTGTGAAGGCTATAAATGAGGTGGAGGCATTTGCTTTGGAAGCAGAGGAGTTGAAATTTGTTGCTTCCCAGTTTAGGCACATCCACAGCAGACAGGTTCAGCACACCTTCCGTTTCTATTCACAGCAGTGGAGAACATGGGCTGCTATCTACATTCAAGCTGCGTGGAGGCGTCATTGCAGGAGGAAGATAGCAGAACAGCGCAGGAGGGAGGAAGAAGAATTATATGACTCTGATGATTATGACAACAGTGATGATTCTGCAAAAGCCTTGGTCAAGCATTCTGATGCGGCTGCTTTTCCCTCTTCTAACCTTGGACTTGCTACAACAGTCTATGCATCTCGCTTTGCTGCAAATCTTCGTGGTCATAGGCGTCGTGATTCAAGTTCCAAGGAGATACTCACACTCCAAAAGCCTCCAGAACCTGACTTCAGTGGTTTTGATGAAAAGTGA 2256 0.4269 MFDSGYKSQYIGGQKEKFVRLDDLDSNLSYQSSSSGMKKLRFNLDSLPLPGRGRKRASKSFRLGVKKGSDGLKTFGRSLKSGVTTWAVFPEDLKVSEKKVFDPQDKNLLYWNKFFEILCIFSVACDPFFFYLPYFNHKSFCLAIDNELASFAVTLRTICDAIYLIRISFQFNTAYIAPSSRVFGRGELVIDPTKIAKRYLRRYFLIDFFSVLPIPQIVVWKYLYRSGRVEVLETKTLLLRIVILQYFPRFIRFLPLASEVKKTAGVFSENALLGAMYYLIWYMLASHITGSCWYLLSIERNDTCWKNACRAVEGCNTHFLYCANSNKHMPGYDSWRNVSETVLKSQCYVEDGSSEFSYGIFSQAIESDIVASIEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPAEVMFSIVIAIMGLILFALLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPPELRERVRRYDQYKWLNTRGVDEESIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYIVREGDPVNEMHFIIRGRLESVTTDGGRSGFFNRGLLKENDFCGEELLTWALDPKSGSNLPSSTRTVKAINEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRRHCRRKIAEQRRREEEELYDSDDYDNSDDSAKALVKHSDAAAFPSSNLGLATTVYASRFAANLRGHRRRDSSSKEILTLQKPPEPDFSGFDEK 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02820 751 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 92 745 - -
Viun10g02820 751 SUPERFAMILY cAMP-binding domain-like 440 630 IPR018490 -
Viun10g02820 751 ProSiteProfiles cAMP/cGMP binding motif profile. 510 640 IPR000595 -
Viun10g02820 751 ProSiteProfiles IQ motif profile. 646 675 IPR000048 GO:0005515
Viun10g02820 751 Pfam Ion transport protein 110 437 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Viun10g02820 751 SUPERFAMILY Voltage-gated potassium channels 103 432 - -
Viun10g02820 751 Gene3D Jelly Rolls 508 628 IPR014710 -
Viun10g02820 751 CDD CAP_ED 510 641 IPR000595 -
Viun10g02820 751 Pfam Cyclic nucleotide-binding domain 531 620 IPR000595 -
Viun10g02820 751 Gene3D - 113 435 - -
Viun10g02820 751 FunFam Cyclic nucleotide-gated ion channel 1 508 626 - -
Viun10g02820 751 FunFam Cyclic nucleotide-gated ion channel 1 437 501 - -
Viun10g02820 751 MobiDBLite consensus disorder prediction 723 751 - -
Viun10g02820 751 SMART cnmp_10 510 641 IPR000595 -
Viun10g02820 751 Gene3D Helix hairpin bin 437 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02820 Viun-Chr10 40978722 40982620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02820 6 747 Ion Channels AT1G15990 68.218 0.0 1001
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02820 K05391 - gmx:100810453 1304.27