Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02812 ATGGATTGTTCATCATGGATTAACACTTCCTTGGATCTCAACATTAATCCACTCAGAGTTCATGAAGAAGTTCCCGAGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTGGAAGAATGTTGGGAATCCAAAAGACCCGTCAAAGAAGAGTCTAGTGACTTGGAGGAGGAGCTGAAGAGGGTGACAGCAGAAAACAAGAAGTTGGCTGAAATGCTGTCGGTGGTGTGTGAGAACTACAACACTTTGCGAAGCCATTTGATGGAATATACGAGGAAAAATGGCGAAAAAGAAACCAGTCCGACATCAAAGAAAAGGAAATCCGAGAGCAGCAACAACAATAGTATTTGTGTGATGGGAACTAACAATGGAAACTCCGAGAGCAGCTCCACTGATGAAGAATCTTGCAAGAAACCGAGGGAAGAAACCATGAAACCAAAAGTTTCAAGAGTTTATGTGAGGACCGAAGCATCTGACACCACTCTTATTGTGAAAGATGGATACCAATGGAGGAAATATGGGCAAAAAGTGACCAGAGATAACCCTTGTCCAAGAGCATATTTCAAATGCTCTTTTGCTCCAAGCTGCCCTGTAAAAAAGAAGGTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTGGCTACTTATGAAGGGGAGCACAACCATCCCCAAGCTTCTTCACAAATGGAGGCAACATCAGGTTCTGGCCGTAGTGTGACCATTGCTTCAGTGCCTTGTGCAGCTGCCACTCAAACACTTGTTACTCTTGACTTGAAAAATTCTAAGGGCAGCAACGATTCCAAGAGCACGAAAACTAAAGTAGATACACCTAAAATGCAGCAGGTTTTGGTGGAACAGATGGCAACTTCTTTGACCACGGATCCTAACTTCAGAGCAGCACTTGTTGCTGCCATCTCAGGAAGATTGTTGCACAATAACTGA 951 0.4364 MDCSSWINTSLDLNINPLRVHEEVPEVESKLFSLGMPKFNVEECWESKRPVKEESSDLEEELKRVTAENKKLAEMLSVVCENYNTLRSHLMEYTRKNGEKETSPTSKKRKSESSNNNSICVMGTNNGNSESSSTDEESCKKPREETMKPKVSRVYVRTEASDTTLIVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGEHNHPQASSQMEATSGSGRSVTIASVPCAAATQTLVTLDLKNSKGSNDSKSTKTKVDTPKMQQVLVEQMATSLTTDPNFRAALVAAISGRLLHNN 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02812 316 SMART WRKY_cls 167 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun10g02812 316 Pfam WRKY DNA -binding domain 168 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun10g02812 316 MobiDBLite consensus disorder prediction 93 108 - -
Viun10g02812 316 ProSiteProfiles WRKY domain profile. 162 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun10g02812 316 MobiDBLite consensus disorder prediction 93 150 - -
Viun10g02812 316 Coils Coil 55 75 - -
Viun10g02812 316 MobiDBLite consensus disorder prediction 134 150 - -
Viun10g02812 316 FunFam WRKY transcription factor 40 152 229 - -
Viun10g02812 316 MobiDBLite consensus disorder prediction 109 133 - -
Viun10g02812 316 SUPERFAMILY WRKY DNA-binding domain 163 227 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun10g02812 316 Gene3D WRKY domain 150 228 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun10g02812 316 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 46 312 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02812 Viun-Chr10 40925865 40927860 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02812 4 316 WRKY Transcription Factor Family AT1G80840 52.599 6.03e-98 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun10g02812 WRKY 3.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02812 - - gmx:100170678 506.908