Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02808 ATGGCTGCTAATCTTGGGGTTGTCACTGGAATGCATCTAGCTGAGCATTGTAGAGCTGAATATTCTCGACTTCCCAACTTCATTCTTTGGGTGATTGCTGAAGTTGCAATAGTGGCTTGTGACATTCCCGAAGTAATTGGGACAGCCTTTGCATTGAACATGCTCTTCAACATACCTGTTTGGATTGGTGTTCTTCTGACAGGACTCAGTACATTGGTCCTCTTAGCATTACAACAATATGGGGTTAGGAAACTTGAATTCTTCATTGCATTTCTAGTATTTACAATTGCTGGTTGCTTTATGGCTGAACTTGGATATGCAAAGCCTGTGGCCAAAGAAGTTGTGACGGGTCTATTTGTTCCAAAACTTAAGGGGAGTGGTGCCACTGGTCTAGCAATTTCACTCCTTGGAGCAATGGTTATGCCACACAATCTCTTCCTCCACTCAGCTCTGGTGCTTTCCAGGAAAATACCCCGATCAGTTCGTGGAATCAAAGAGGCTTGCAGATTTTACATGATAGAAAGTGCCTTTGCTCTTACGGTGGCCTTCCTCATAAATATTTCTGTTATTTCTGTAAGTGGTGCAGTTTGCCATTCTTCAAACTTAAGCGCTGAAGATCAGAAAAGTTGTCAGGATTTGGATTTAAATAAAGCCTCTTTTTTATTAAGAAATGTCTTGGGCAAATGGAGTTCAAAACTATTTGCAGTTGCTTTACTTGCCTCAGGTCAAAGTTCTACCATAACAGGAACATATGCAGGCCAATACGTCATGCAGGGATTTCTTGATTTGCGACTGAAATCATGGATTCGGAATCTGCTAACCCGTTGCTTAGCCATTGTTCCTAGTTTGATTGTTGCACTCATAGGTGGCTCTGCTGGAGCTGGAGAACTCATCATAATTGCATCGATGATCTTATCATTTGAACTTCCTTTTGCTCTGATCCCACTCCTCAAGTTCACCAGCAGCAAAATCAAGATGGGAGAACATGTCAACTCAATCACGATTTCAGCTGTTACTTGGATCATTGGTTCCCTCATCATGGGCATAAACATATACTATTTAATGACTAGCTTTGTGAAGTTGCTTCTTCATGCTCACTTAAGAATTGTGGCTAAGGTATTTCTGGGGATATTAGGATTTTCTGGTGTGGCACTATACATTGGAGGCATTGCATATTTAGTGTTTCGCAAAAATAAAAAGACTACACATGTTTTGACACTTAGTACATTGGAAGATCAGCAAATGGCTAATGCAGAAGGTGATGTATCAATGTATAGTCTCCCAAGAGAAGACATAGTAAGCATGCAATTGCCTCAAAAAAGGACTCCTGCTGAATTTGATTAA 1344 0.4077 MAANLGVVTGMHLAEHCRAEYSRLPNFILWVIAEVAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLVLLALQQYGVRKLEFFIAFLVFTIAGCFMAELGYAKPVAKEVVTGLFVPKLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYMIESAFALTVAFLINISVISVSGAVCHSSNLSAEDQKSCQDLDLNKASFLLRNVLGKWSSKLFAVALLASGQSSTITGTYAGQYVMQGFLDLRLKSWIRNLLTRCLAIVPSLIVALIGGSAGAGELIIIASMILSFELPFALIPLLKFTSSKIKMGEHVNSITISAVTWIIGSLIMGINIYYLMTSFVKLLLHAHLRIVAKVFLGILGFSGVALYIGGIAYLVFRKNKKTTHVLTLSTLEDQQMANAEGDVSMYSLPREDIVSMQLPQKRTPAEFD 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02808 447 PRINTS Natural resistance-associated macrophage protein signature 132 155 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02808 447 PRINTS Natural resistance-associated macrophage protein signature 82 103 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02808 447 PRINTS Natural resistance-associated macrophage protein signature 302 321 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02808 447 PRINTS Natural resistance-associated macrophage protein signature 57 76 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02808 447 PRINTS Natural resistance-associated macrophage protein signature 29 55 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02808 447 PRINTS Natural resistance-associated macrophage protein signature 270 287 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02808 447 PRINTS Natural resistance-associated macrophage protein signature 242 261 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02808 447 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 2 324 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02808 447 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 1 401 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02808 447 Pfam Natural resistance-associated macrophage protein 1 332 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02808 447 NCBIfam Nramp family divalent metal transporter 3 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02808 Viun-Chr10 40889840 40893711 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02808 1 440 Inorganic Solute Cotransporters AT1G15960 78.054 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02808 K21398 - gmx:100815628 806.979