Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02807 ATGAGTGTCACAGGTTCATCTTCTGGGCACCCTCAATTCATTGCCAGCACCGGCAACAGAAGCTTGTCCAATGCGCCGTTGATTGAGAATCCAGACTCTGATCAAATTGTTGTACCCGATAGAACAAGCTGGAAAAACTTATTTGCATACGTGGGGCCTGGATTTCTTGTTTCCATTGCATACATCGACCCCGGAAACTTTGAAACGGATCTTCAATCAGGAGCACAATATAAATATGAGTTACTATGGATCATATTGGTGGCGTCATGTGCTGCTCTTCTAATTCAAACAATGGCTGCTAATCTTGGGGTTGTCACTGGAATGCATCTAGCTGAGCATTGTAGAGCTGAATATTCTCGACTTCCCAACTTCATTCTTTGGGTGATTGCTGAAGTTGCAATAGTGGCTTGTGACATTCCCGAAGTAATTGGGACAGCCTTTGCATTGAACATGCTCTTCAACATACCTGTTTGGATTGGTGTTCTTCTGACAGGACTCAGTACATTGGTCCTCTTAGCATTACAACAATATGGGGTTAGGAAACTTGAATTCTTCATTGCATTTCTAGTATTTACAATTGCTGGTTGCTTTATGGCTGAACTTGGATATGCAAAGCCTGTGGCCAAAGAAGTTGTGACGGGTCTATTTGTTCCAAAACTTAAGGGGAGTGGTGCCACTGGTCTAGCAATTTCACTCCTTGGAGCAATGGTTATGCCACACAATCTCTTCCTCCACTCAGCTCTGGTGCTTTCCAGGAAAATACCCCGATCAGTTCGTGGAATCAAAGAGGCTTGCAGATTTTACATGATAGAAAGTGCCTTTGCTCTTACGGTGGCCTTCCTCATAAATATTTCTGTTATTTCTGTAAGTGGTGCAGTTTGCCATTCTTCAAACTTAAGCGCTGAAGATCAGAAAAGTTGTCAGGATTTGGATTTAAATAAAGCCTCTTTTTTATTAAGAAATGTCTTGGGCAAATGGAGTTCAAAACTATTTGCAGTTGCTTTACTTGCCTCAGGTCAAAGTTCTACCATAACAGGAACATATGCAGGCCAATACGTCATGCAGGGATTTCTTGATTTGCGACTGAAATCATGGATTCGGAATCTGCTAACCCGTTGCTTAGCCATTGTTCCTAGTTTGATTGTTGCACTCATAGGTGGCTCTGCTGGAGCTGGAGAACTCATCATAATTGCATCGATGATCTTATCATTTGAACTTCCTTTTGCTCTGATCCCACTCCTCAAGTTCACCAGCAGCAAAATCAAGATGGGAGAACATGTCAACTCAATCACGATTTCAGCTGTTACTTGGATCATTGGTTCCCTCATCATGGGCATAAACATATACTATTTAATGACTAGCTTTGTGAAGTTGCTTCTTCATGCTCACTTAAGAATTGTGGCTAAGGTATTTCTGGGGATATTAGGATTTTCTGGTGTGGCACTATACATTGGAGGCATTGCATATTTAGTGTTTCGCAAAAATAAAAAGACTACACATGTTTTGACACTTAGTACATTGGAAGATCAGCAAATGGCTAATGCAGAAGGTGATGTATCAATGTATAGTCTCCCAAGAGAAGACATAGTAAGCATGCAATTGCCTCAAAAAAGGACTCCTGCTGAATTTGATTAA 1635 0.4128 MSVTGSSSGHPQFIASTGNRSLSNAPLIENPDSDQIVVPDRTSWKNLFAYVGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALLIQTMAANLGVVTGMHLAEHCRAEYSRLPNFILWVIAEVAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLVLLALQQYGVRKLEFFIAFLVFTIAGCFMAELGYAKPVAKEVVTGLFVPKLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYMIESAFALTVAFLINISVISVSGAVCHSSNLSAEDQKSCQDLDLNKASFLLRNVLGKWSSKLFAVALLASGQSSTITGTYAGQYVMQGFLDLRLKSWIRNLLTRCLAIVPSLIVALIGGSAGAGELIIIASMILSFELPFALIPLLKFTSSKIKMGEHVNSITISAVTWIIGSLIMGINIYYLMTSFVKLLLHAHLRIVAKVFLGILGFSGVALYIGGIAYLVFRKNKKTTHVLTLSTLEDQQMANAEGDVSMYSLPREDIVSMQLPQKRTPAEFD 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02807 544 Hamap Divalent metal cation transporter MntH [mntH]. 31 455 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02807 544 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02807 544 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02807 544 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02807 544 PRINTS Natural resistance-associated macrophage protein signature 367 384 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02807 544 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02807 544 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02807 544 PRINTS Natural resistance-associated macrophage protein signature 339 358 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02807 544 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 39 498 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02807 544 NCBIfam Nramp family divalent metal transporter 52 420 - -
Viun10g02807 544 Pfam Natural resistance-associated macrophage protein 67 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun10g02807 544 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 421 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02807 Viun-Chr10 40889840 40894852 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02807 15 537 Inorganic Solute Cotransporters AT1G15960 78.667 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02807 K21398 - gmx:100815628 980.319