Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02802 ATGGATAGCGAAGAAGTCCCATCAGCACCTTCCACACCTGCAACACCAGGGGCCCCTCTTTTCGGTGGCAATGGCAACCTCAGGTTTGAGAAACCTAACGTTGTAAGGAAATCGTCCTTCCTCAGAAGTTGCAAATGCTTCAGTGTTGAACAATGGACCTTGGAAGATGGAGCCATGCCTAGAGTTTCTTGCTCTTTACCCGCCCCTCAAATCCCTCTGGCAAAAAAGGTTGGAGCTGAGTTTATTGGCACGTTCATTCTCATGTTTGCTGCTATAGGCACTGCTATTGTGAACCAAAAAACTCATGGCTCAGAGACTCTGATTGGATGTGCTGCGGCAAATGGACTTGCTGTCATGATCATCATTTTCTCCACCGGTCACATCTCCGGGGCTCATCTCAACCCCGCCGTCACCATTTCCTTCGCTGCATTAAAGCACTTTCCATGGAAGAATGTGCCGGTGTATATTGGTACACAGGTTTTGGCATCAGTGAGTGCTGCATTTGCTCTGAAAGTGGTTTTTCATCCCTTCATGAGCGGTGGAGTAACGGTCCCTTCTGTAGGATACGGGCAAGCTTTCGCCACAGAGTTCATTGTCAGCTTTATTCTCATGTTCGTTGTCACTGCAGTGGCCACCGACACAAGAGCTGCGGGAGAGCTTGCAGGAATAGCAGTGGGAGGCACAGTGATGCTCAACATACTTATAGCCGGGCCAGCAACGGGAAGTTCAATGAACCCTGTTAGAACATTGGGTCCAGCCATTGCTGCAAACAACTACAAGGGCATATGGGTGTATCTCATTGCTCCCATATTTGGAACTCTGTGTGGGGCAGGTGCCTACACTGTGGTGAAGCTGCCCCAGGAAGAGGCAACAAAGCCTCCTAATTCACCTTCTGCCATTGTTGGAAGCTTCAGAAGGTGA 921 0.4951 MDSEEVPSAPSTPATPGAPLFGGNGNLRFEKPNVVRKSSFLRSCKCFSVEQWTLEDGAMPRVSCSLPAPQIPLAKKVGAEFIGTFILMFAAIGTAIVNQKTHGSETLIGCAAANGLAVMIIIFSTGHISGAHLNPAVTISFAALKHFPWKNVPVYIGTQVLASVSAAFALKVVFHPFMSGGVTVPSVGYGQAFATEFIVSFILMFVVTAVATDTRAAGELAGIAVGGTVMLNILIAGPATGSSMNPVRTLGPAIAANNYKGIWVYLIAPIFGTLCGAGAYTVVKLPQEEATKPPNSPSAIVGSFRR 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02802 306 PANTHER AQUAPORIN NIP2-1 45 292 IPR034294 -
Viun10g02802 306 Pfam Major intrinsic protein 73 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun10g02802 306 SUPERFAMILY Aquaporin-like 72 290 IPR023271 -
Viun10g02802 306 FunFam Aquaporin NIP2-1 63 295 - -
Viun10g02802 306 ProSitePatterns MIP family signature. 132 140 IPR022357 -
Viun10g02802 306 Gene3D Glycerol uptake facilitator protein. 68 296 IPR023271 -
Viun10g02802 306 PRINTS Major intrinsic protein family signature 75 94 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun10g02802 306 PRINTS Major intrinsic protein family signature 151 170 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun10g02802 306 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun10g02802 306 PRINTS Major intrinsic protein family signature 195 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun10g02802 306 PRINTS Major intrinsic protein family signature 226 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun10g02802 306 PRINTS Major intrinsic protein family signature 114 138 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun10g02802 306 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02802 Viun-Chr10 40855758 40859061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02802 1 306 Major Intrinsic Protein MIP AT1G80760 71.061 3.30e-153 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02802 K09874 - gmx:100798410 529.635