Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02800 ATGGATCTTCCAAGGCAAGAGCCATGCCCTTCTGAGAGCTTGAACATCATCACATTTTCAGATACCATGCCATGCCAAAGATCTTCCATAGACACTCAAAACAAGAGGAATCACACAGAAAGTGATGATCAAAAGCACCCACATGACTCAAATCCTCATGTCTTGCTAGATCTAAGTCTCTCCAACAAGGATTCTGGTGATGATGAGTCAAAGCCAGAACTCAACCTCCTCAATTGTTTCCACACGAATTTCTCAGAAAATTCATCAGAATCTAGCCAGGGAAATGAACTGGATCCCCGGGTTTTCTCATGCAACTACTGCCAAAGAAAGTTTTATAGTTCTCAGGCACTTGGGGGACACCAGAATGCACACAAACGTGAAAGAACTTTAGCAAGAAGAGGATACAAAGCAGGTGCAGCAGATTTTGGACACACCTACTCCACCATGCCTTTTCTTCCTTCTCATAGCTTATACAACAAATCACTTGGAATTCAGGTTCATGCCATGATCAACAAACCTTCTTATCAAGCACCAATTTTCGGGTTGTGCCGTTCCAATGGGTGGCAGAGGCAGCCTTTGGATTCACAACCAGCAATTGGAAATTTTCGTGTGGGGGCAGAATCTGAGTCACCCTTGGCTGATAGTGTTCCAAAGTTAGGCAAGTTTTCCACAAGGGTAGTCACGGAGGGATTTGGAGGTTACTGTTTTGGTAGCTTTTCTCATTTGAAGTCTAAACAAGAGAAGTTGCAGAAGCTTGACTTGTCCCTTAAGCTCTAA 777 0.4363 MDLPRQEPCPSESLNIITFSDTMPCQRSSIDTQNKRNHTESDDQKHPHDSNPHVLLDLSLSNKDSGDDESKPELNLLNCFHTNFSENSSESSQGNELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYKAGAADFGHTYSTMPFLPSHSLYNKSLGIQVHAMINKPSYQAPIFGLCRSNGWQRQPLDSQPAIGNFRVGAESESPLADSVPKLGKFSTRVVTEGFGGYCFGSFSHLKSKQEKLQKLDLSLKL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02800 258 Gene3D Classic Zinc Finger 80 141 - -
Viun10g02800 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Viun10g02800 258 MobiDBLite consensus disorder prediction 33 52 - -
Viun10g02800 258 FunFam Zinc finger protein 2 80 148 - -
Viun10g02800 258 MobiDBLite consensus disorder prediction 11 32 - -
Viun10g02800 258 SUPERFAMILY beta-beta-alpha zinc fingers 99 129 IPR036236 -
Viun10g02800 258 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Viun10g02800 258 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 258 IPR044246 GO:0009788
Viun10g02800 258 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02800 Viun-Chr10 40838423 40839641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02800 1 258 C2H2 Transcription Factor Family AT5G10970 38.909 2.96e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun10g02800 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02800 - - gmx:100816861 437.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02800 10 40838423 40839641 Viun10g02800 10 40838423 40839641 ECH