Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02793 ATGTGGAATCCTCTGTCATGGGTCATGGAAGCTGCTGCTATCATGGCAATTGCACTGGCAAATGGTGGAGGCAAACCCCCAGATTGGCAGGACTTTATAGGAATACTGGCATTGCTCGTAATCAACTCCACCATTAGTTTTATTGAAGAAAATAATGCAGGCAATGCCGCTGCAGCACTTATGGCAGGTCTTGCTCCCAAAACTAAGGTTCTGAGAGATGGGAAGTGGGTCGAGGAAGAGGCTGCTATATTGGTACCCGGAGACATCATCAGCATCAAGTTAGGAGACATCGTACCAGCTGATGCACGTCTCTTAGACGGAGATCCTCTCAAGATTGATCAATCTGCATTGACCGGTGAATCATTGCCTGTTTCAAAAAATCCAGGTGATGAAGTCTTCTCCGGTTCCACTGTTAAGCAAGGAGAGCTTGAGGCTGTTGTAATTGCTACTGGAGTACACACATTTTTTGGTAAAGCTGCTCATTTGGTCGACAGCACCAACCAAGAAGGTCACTTTCAGAAGGTGTTGACAGCCATCGGTAACTTTTGCATTTGTTCAATAGCTGTTGGTATGGTTGTAGAAATTGTTGTTATGTATCCAATTCAGCACCGAGCCTACAGGAATGGAATTGACAATCTATTGGTCCTTCTCATTGGAGGCATTCCGATTGCCATGCCGACTGTCTTGTCTGTAACTATGGCCATTGGTTCCCATAGACTCTCCCAGCAAGGTGCCATTACTAAGAGAATGACAGCCATTGAGGAAATGGCTGGAATGGATGTTTTATGCAGTGACAAGACTGGCACTTTAACTCTCAACAAACTCACCGTAGACAAGACTTTAATTGAGGTTTTCGGAAAAAATGCTGATAAGGATACTGTAATTTTACTTGGAGCTCGAGCCTCTAGGGTGGAGAATCAAGATGCTATTGATGCTTGCATTGTTGGAATGTTGGGTGACCCAAGAGAGGCAAGAGATGGTATCAAAGAGGTCCATTTCTTACCCTTCAATCCAGTAGACAAGCGCACCGCCATAACATATATAGATGACAACGGAAATTGGCATCGAGCAAGCAAAGGTGCACCAGAGCAGATTATTGAGCTCTGTCATCTTCGGGAAGATGTGAAGAAAAAAGTTCATGCAATCATTGGAAAATTTGCTGACAGGGGTCTCCGTTCCCTTGCTGTTGCCCAACAAGAAGTTCCAGAGAAAACCAAGGAGAGCAGTGGAGGACCGTGGCAATTTGTGGGTCTCTTGCCTTTGTTTGACCCACCTAGACACGATAGTGCAGAAACAATTCGACGTGCTCTTCATCTTGGAGTCAACGTCAAGATGATCACCGGCGATCAACTGGCTATCGGAAAGGAGACTGCTCGGAGACTTGGCATGGGAAGTAACATGTACCCGTCTTCCTCCCTTCTTGGCGATCACAAGGATGAATCTATTGCTGCACTTCCCGTCGAAGAGCTTATTGAACAGGCCGATGGATTTGCCGGTGTTTTCCCTGAGCACAAATACGAGATTGTGAAAATCCTACAAGAGAGAAAACACATATGCGGAATGACAGGAGATGGTGTTAACGATGCTCCTGCCCTCAAAAAGGCAGATATTGGAATTGCAGTAGCTGATGCAACAGACGCAGCTAGGAGTGCATCCGACATAGTACTAACAGAGCCTGGTCTGAGCGTGATTGTGAGTGCAGTTTTGACCAGCAGATCCATTTTCCAGAGAATGAAGAACTACACCATTTACGCAGTTTCCATCACAATTAGGATCGTGTTGGGCTTTTTACTCATTGCACTTATATGGCAATTTGATTTCTCACCTTTCATGGTTTTAATCATCGCAATACTAAATGACGGAACAATCATGACCATCTCGAAGGACAGGGTAAAGCCATCCCCTCTACCCGATTCATGGAAGTTGAATGAGATTTTTGCCACAGGCATAGTTCTCGGTACCTACCTCGCTATCATGACGGTTGTCTTCTTTTGGGCTGCTCACGCTTCTGATTTCTTCACTCAAAAATTCGGTGTTAGATCTATCAGACTTAACCCGGATGAACTTACCGCAGCGGTTTACCTTCAAGTAAGTATTGTAAGTCAGGCTCTTATATTTGTAACTCGATCAAGGAGTTGGTCTTTCCTTGAGCGCCCTGGTTTTTTGCTTGTCACCGCATTCATAGTGGCACAACTGATTGCCACAGTTATCGCTGTTTATGCAAATTGGAGTTTTGCAAGGATGAAAGGGATTGGATGGGGCTGGGCTGGTGTCATTTGGCTCTATAGTATCATCTTCTACATCCCATTGGATGTTTTGAAATTCGGAATTCGATATTTCTTGAGTGGCAAGGCATGGAATAATATCACCGAAAATAGGACTGCATTCACATCAAAGAAGGATTATGGAAAAGAAGAACGAGAAGCACAATGGGCTATTGCTCAACGCACATTACATGGCTTGAATCCTCCTGAAAACGAACCCACATTCTCAGACAGAACAAACTACCGCGAATTATCTGAAATTGCAGAACAGGCAAGAAAACGAGCTGAAGTTGCAAGATTGAGGGAACTTCACACTTTGAAGGGACATGTGGAGTCGGTTGTGAAATTGAAAGGACTGGACATCGATACAATTCAACAGCACTACACTGTTTGA 2658 0.4458 MWNPLSWVMEAAAIMAIALANGGGKPPDWQDFIGILALLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWVEEEAAILVPGDIISIKLGDIVPADARLLDGDPLKIDQSALTGESLPVSKNPGDEVFSGSTVKQGELEAVVIATGVHTFFGKAAHLVDSTNQEGHFQKVLTAIGNFCICSIAVGMVVEIVVMYPIQHRAYRNGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKTLIEVFGKNADKDTVILLGARASRVENQDAIDACIVGMLGDPREARDGIKEVHFLPFNPVDKRTAITYIDDNGNWHRASKGAPEQIIELCHLREDVKKKVHAIIGKFADRGLRSLAVAQQEVPEKTKESSGGPWQFVGLLPLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIGKETARRLGMGSNMYPSSSLLGDHKDESIAALPVEELIEQADGFAGVFPEHKYEIVKILQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRSIFQRMKNYTIYAVSITIRIVLGFLLIALIWQFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLNEIFATGIVLGTYLAIMTVVFFWAAHASDFFTQKFGVRSIRLNPDELTAAVYLQVSIVSQALIFVTRSRSWSFLERPGFLLVTAFIVAQLIATVIAVYANWSFARMKGIGWGWAGVIWLYSIIFYIPLDVLKFGIRYFLSGKAWNNITENRTAFTSKKDYGKEEREAQWAIAQRTLHGLNPPENEPTFSDRTNYRELSEIAEQARKRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02793 885 SUPERFAMILY HAD-like 259 569 IPR036412 -
Viun10g02793 885 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 782 IPR023298 -
Viun10g02793 885 Pfam haloacid dehalogenase-like hydrolase 259 536 - -
Viun10g02793 885 SUPERFAMILY Calcium ATPase, transduction domain A 66 163 IPR008250 -
Viun10g02793 885 Coils Coil 836 856 - -
Viun10g02793 885 Gene3D - 66 150 - -
Viun10g02793 885 NCBIfam plasma-membrane proton-efflux P-type ATPase 1 740 IPR006534 GO:0008553|GO:0016020|GO:0120029
Viun10g02793 885 Gene3D - 260 559 IPR023214 -
Viun10g02793 885 FunFam Plasma membrane ATPase 415 570 - -
Viun10g02793 885 SFLD p-type atpase 245 573 IPR044492 -
Viun10g02793 885 FunFam Plasma membrane ATPase 66 150 - -
Viun10g02793 885 ProSitePatterns E1-E2 ATPases phosphorylation site. 265 271 IPR018303 -
Viun10g02793 885 Pfam E1-E2 ATPase 65 242 - -
Viun10g02793 885 Gene3D - 28 749 - -
Viun10g02793 885 Gene3D - 834 885 - -
Viun10g02793 885 SFLD C1.7: P-type atpase like 245 573 - -
Viun10g02793 885 FunFam ATPase 4 plasma membrane-type 508 749 - -
Viun10g02793 885 PRINTS P-type cation-transporting ATPase superfamily signature 113 127 - -
Viun10g02793 885 PRINTS P-type cation-transporting ATPase superfamily signature 417 428 - -
Viun10g02793 885 PRINTS P-type cation-transporting ATPase superfamily signature 439 449 - -
Viun10g02793 885 PRINTS P-type cation-transporting ATPase superfamily signature 263 277 - -
Viun10g02793 885 PRINTS P-type cation-transporting ATPase superfamily signature 545 557 - -
Viun10g02793 885 PRINTS P-type cation-transporting ATPase superfamily signature 522 541 - -
Viun10g02793 885 CDD P-type_ATPase_H 1 775 IPR006534 GO:0008553|GO:0016020|GO:0120029
Viun10g02793 885 PRINTS H+-transporting ATPase (proton pump) signature 494 510 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun10g02793 885 PRINTS H+-transporting ATPase (proton pump) signature 553 578 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun10g02793 885 PRINTS H+-transporting ATPase (proton pump) signature 379 397 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun10g02793 885 PRINTS H+-transporting ATPase (proton pump) signature 522 538 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun10g02793 885 PRINTS H+-transporting ATPase (proton pump) signature 694 715 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun10g02793 885 PANTHER CALCIUM-TRANSPORTING ATPASE 1 817 - -
Viun10g02793 885 Gene3D - 275 422 IPR023299 GO:0000166
Viun10g02793 885 FunFam Plasma membrane ATPase 275 422 - -
Viun10g02793 885 NCBIfam HAD-IC family P-type ATPase 35 285 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun10g02793 885 NCBIfam HAD-IC family P-type ATPase 496 611 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02793 Viun-Chr10 40800323 40804429 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02793 1 885 Primary Pumps ATPases AT3G42640 83.955 0.0 1523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02793 K01535 - gmx:100818997 1619.75