Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02786 ATGACGATGAACGACGAAATCTACTTACACGCGCCAACCACCACCGTCGCCGCCGCTAACTTTTTCCCTCCGAAACCCGAAACGGTGTCGTTGCGGACGGTGGGGTCATCGCGGGAGCTGCGCTACGAAACGGGGCTGGAAGGGATCGCCGCGGTGGTTGGAGAACACGTTCTTTTCGGGACGTCGTCGTCGTCGACGTTGCATGCTCCGGAGACGCCGAAGAAAACGGCTGGGGTGTCGGCGAGCAAGAGTTACCGGGGGGTGCGGAAGAGACCGTGGGGGAGGTGGTCGGCGGAGATACGCGACCGGATCGGGCGGTGCCGCCACTGGCTGGGGACGTTCGACACCGCGGAGGAAGCGGCGCGTGCGTACGACGCGGCGGCGAGAAGACTCAGAGGCGCGAAGGCGAGGACCAACTTCAAGATACCCTCGGTGTTGCCTCTTTCTCCGTCGTCGGAAGGTGGTGTTGTGAAGCCGAAAGCCGCGCGCAATAACGCTAGGAAGTGTTCTTCTGTGGAGCAATTGTTCAGTGGTGTGCCTCAGGTTCGAAGAAACGATGGTGGTGGTGAGAATGTGAACGTGAACGTGGAGGTGGAGGTGAATTTGAAGCTGGGTGTGAGGAACAGTAGAATGGTTATTTAG 642 0.5981 MTMNDEIYLHAPTTTVAAANFFPPKPETVSLRTVGSSRELRYETGLEGIAAVVGEHVLFGTSSSSTLHAPETPKKTAGVSASKSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGAKARTNFKIPSVLPLSPSSEGGVVKPKAARNNARKCSSVEQLFSGVPQVRRNDGGGENVNVNVEVEVNLKLGVRNSRMVI 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02786 213 Gene3D AP2/ERF domain 83 142 IPR036955 GO:0003700|GO:0006355
Viun10g02786 213 Coils Coil 117 137 - -
Viun10g02786 213 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Viun10g02786 213 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Viun10g02786 213 Pfam AP2 domain 84 133 IPR001471 GO:0003700|GO:0006355
Viun10g02786 213 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 72 163 - -
Viun10g02786 213 MobiDBLite consensus disorder prediction 63 83 - -
Viun10g02786 213 ProSiteProfiles AP2/ERF domain profile. 84 141 IPR001471 GO:0003700|GO:0006355
Viun10g02786 213 SMART rav1_2 84 147 IPR001471 GO:0003700|GO:0006355
Viun10g02786 213 CDD AP2 83 142 IPR001471 GO:0003700|GO:0006355
Viun10g02786 213 FunFam Ethylene-responsive transcription factor 2 83 142 - -
Viun10g02786 213 SUPERFAMILY DNA-binding domain 84 141 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02786 Viun-Chr10 40767801 40768757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02786 22 147 AP2-EREBP Transcription Factor Family AT1G80580 57.037 3.17e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun10g02786 AP2 2.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02786 - - gmx:102667667 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02786 10 40767801 40768757 Viun10g02786 10 40767801 40768757 ECH