Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02785 ATGGGGGAGCCATGCCAAAAATACTGGTTTTCTGATATGGAGATACAAGATTTTGATTTCTTTAACCAAAGCCACAAGATTGAGTCACTGGATGATGAAGATCAGATCTTTGAGGAGATCATGCATCGACCAGCTTTCTCTTCTGACAGTGAAACTCACTCTCCCAAAGTTCAAACCAAATCAAACTATGGTGGCAGTGATTACACAACCCTCACCAGCAGCAAGAACAGCAACGTTGTGATGAAGAGCAACAGCTCTAACTTTCTGTTCTCATCACAACATGCACCAGAGAAACCTGCCACAGCCCCTTCTCCTCCAACTGCGTATATTCTATCTTTCAATGACTCCACCGTTGTTGCTGCTACCTGCCAAACCTACGATGGAAAACCGCCGTACCAAGAGGGTGTAGCCGCAGGGAGCGGTGGCGCGTGTCTTCCCTCAAAAGGGGTCTCAGAAAAACATGAGATTGAACCTAAGGCCAACTCAGCAACAAGAAAAGGTAGAAGTTCTGGAGAGACACTGGACCATATAATGACTGAGAGAAAAAGGAGACGGGAACTGACAGAGAGATTCATTGCACTTTCAGCCACCATACCTGGTTTGAAGAAGATCGACAAGGCAACCATACTTTGCGAAGCAATCACTTATGTGAAACGACTTAAAGAGCGTGTAAGAGAACTAGAAGAACAATGCAAGAGGACAAGGGTAGAGTCGGTGTCTTTTGTTCATCAGAGGTCCAACGTTATTTGTAGTGATGATAAAGGGACAACCTCTGGTGCAACGAAATCTGATGAATGCTATAAAACCAATGAAGCACTCCCTACAGTGGAAGCAAGAGTGTTTAAAAAAGATGTACTAATCCGGATTCACTGCAAGATACAAAATGGCATTTTGATAAAAATTTTGGATTATCTTAATACCCTTGATCTCTCCACAACCAGCAACAGTGTAATGCCATTTGGAAGTTCAACTCTTGACATCAGCATCGTTGCTCAGATGGGTGAAAAATTCAACGCAACAATGAATGATCTAGTGAAAAACCTGAGAGTGGTTCTCTTGCAGTCATCTGAAGCTCCACAAATGATCAAAGGAGTCTGA 1098 0.4326 MGEPCQKYWFSDMEIQDFDFFNQSHKIESLDDEDQIFEEIMHRPAFSSDSETHSPKVQTKSNYGGSDYTTLTSSKNSNVVMKSNSSNFLFSSQHAPEKPATAPSPPTAYILSFNDSTVVAATCQTYDGKPPYQEGVAAGSGGACLPSKGVSEKHEIEPKANSATRKGRSSGETLDHIMTERKRRRELTERFIALSATIPGLKKIDKATILCEAITYVKRLKERVRELEEQCKRTRVESVSFVHQRSNVICSDDKGTTSGATKSDECYKTNEALPTVEARVFKKDVLIRIHCKIQNGILIKILDYLNTLDLSTTSNSVMPFGSSTLDISIVAQMGEKFNATMNDLVKNLRVVLLQSSEAPQMIKGV 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02785 365 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 220 IPR011598 GO:0046983
Viun10g02785 365 PANTHER BHLH TRANSCRIPTION FACTOR 42 355 - -
Viun10g02785 365 Pfam Helix-loop-helix DNA-binding domain 176 220 IPR011598 GO:0046983
Viun10g02785 365 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 242 IPR036638 GO:0046983
Viun10g02785 365 SMART finulus 177 226 IPR011598 GO:0046983
Viun10g02785 365 MobiDBLite consensus disorder prediction 149 172 - -
Viun10g02785 365 Gene3D - 161 237 IPR036638 GO:0046983
Viun10g02785 365 MobiDBLite consensus disorder prediction 47 69 - -
Viun10g02785 365 Coils Coil 217 237 - -
Viun10g02785 365 MobiDBLite consensus disorder prediction 44 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02785 Viun-Chr10 40757428 40759172 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02785 9 352 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 32.865 7.50e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun10g02785 HLH 2.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02785 - - gmx:100777846 513.072