Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02783 ATGATGGAGGACTCATGGCAGAACTGGCTCTCTCATTTGGGAATGAATGACAACTTTGGGTGCACCAATAACGGTGCACGCTATGAAGAGATGGTGCGGTTGAATAATAATATGCAGGGTTGTTGTGATAGCTCCAATAATGAGGTAGCATCATGTATGGAGGTAAAAGAGGAACACTCAGAGTGTTGTTGGCGTAAAAGGGGTGTAGGGAAGCATGAGGAACTGGAGGGAGAGGGAAGGGAGAAGAGAGGAACAAAAAGGGCAAGAACCTCTTCTGAGATTGAATATCACATCATCTCAGAGAGAAAAAGGAGACAGGATATAGCAGAGAAATTCATAGCACTCTCAGCAACTATACCTGGCTTGAAGAAGATAGACAAGGCATCAATACTTGGGGAAGCCATAAAGTACATGCGACAACTTCAACAACGCATAGCAGTGTTGGAAAAAGGTAGCAATAGTAACAGTGTAAAGTCGTTTATGATAGCCAAATCACACCTTTGTTCAGCATCATGTGAAGCAAAGTCTAGCGTTGAAATGCTCCCTGAAGTTGAAGCAAGTGGGTTAGAGAATGAAGTGCTGATTAGAATCTACTGTGAGAAACGAAAGGACATGATGCTAAACCTAATGACCCTTCTAAAACATGTTCATCTCTCAGTAACCAGTAGCAGTGTATTGCCATTTGGAAACTCTCTTCTCAACATCATCATTGTTGCTCAGATGAGTGAGGAGTACAGCTTGACGGTTACTGATTTGGTTAAGACGTTGAAGCAGAATCTTTTGAAGTTTTATGAGGTGTAA 801 0.4207 MMEDSWQNWLSHLGMNDNFGCTNNGARYEEMVRLNNNMQGCCDSSNNEVASCMEVKEEHSECCWRKRGVGKHEELEGEGREKRGTKRARTSSEIEYHIISERKRRQDIAEKFIALSATIPGLKKIDKASILGEAIKYMRQLQQRIAVLEKGSNSNSVKSFMIAKSHLCSASCEAKSSVEMLPEVEASGLENEVLIRIYCEKRKDMMLNLMTLLKHVHLSVTSSSVLPFGNSLLNIIIVAQMSEEYSLTVTDLVKTLKQNLLKFYEV 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02783 266 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 95 157 IPR036638 GO:0046983
Viun10g02783 266 Pfam Helix-loop-helix DNA-binding domain 97 142 IPR011598 GO:0046983
Viun10g02783 266 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 92 141 IPR011598 GO:0046983
Viun10g02783 266 Gene3D - 88 153 IPR036638 GO:0046983
Viun10g02783 266 PANTHER BHLH TRANSCRIPTION FACTOR 65 262 - -
Viun10g02783 266 SMART finulus 98 147 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02783 Viun-Chr10 40742869 40744722 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02783 82 263 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.513 6.85e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun10g02783 HLH 4.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02783 - - gmx:100778916 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g04100 5 48295216 48297129 Viun10g02783 10 40742869 40744722 PCT