Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02782 ATGGAGGAGTCAGGGGAAAATTGGCCTTCTGATTCTTACTTGGAAGTAGGTAATGATGTCAAGGATTTGTGTTTTGACGATGAAGAATTGGCCAGTGAAGAAGATGAAGGAGATTCGTTTGCTGAGATGAAAAGTTCCGACAGAAAACAAAGACAACAGAAACTTAAAGAGAGGTTCCTTGCACTCTCAGCAACCATACCTGGTTTCCAAGAGATGGACAAGACATCGATCCTGGACAAAGCAAGCAACTACGTGAGACAACTGGAACAACGAGTGAGAGAGCTGGAGCAAGAAGTTCAATCGAACAAGGTTTGTGGTAGCAGCAGTTCCTGCGAGGTGAACTCAAACCATGGATCAAATCAAATTCTTCCCGAAGTGAAAGTGAGAGTGTTGCAGAAGGAAGTGCTCATAATAGTGCACTGTGAGAAACAGAAAGGAATCATGCTCAAAATACTATCTCACCTCGAAAATATCAATCTCTCTGTACTCAACAGCAGCGTCTTGCGATTTGGAAAGTCCACACTCGACATCACCATTATAGCACAGATGGGTGAAGGATACCAGATGGGAGTGGATGAACTGGTGGAGACTCTGAGATTAACGATCTTGAATAAGTAG 618 0.4337 MEESGENWPSDSYLEVGNDVKDLCFDDEELASEEDEGDSFAEMKSSDRKQRQQKLKERFLALSATIPGFQEMDKTSILDKASNYVRQLEQRVRELEQEVQSNKVCGSSSSCEVNSNHGSNQILPEVKVRVLQKEVLIIVHCEKQKGIMLKILSHLENINLSVLNSSVLRFGKSTLDITIIAQMGEGYQMGVDELVETLRLTILNK 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02782 205 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 39 88 IPR011598 GO:0046983
Viun10g02782 205 Coils Coil 78 105 - -
Viun10g02782 205 PANTHER BHLH TRANSCRIPTION FACTOR 48 203 - -
Viun10g02782 205 SMART finulus 44 94 IPR011598 GO:0046983
Viun10g02782 205 MobiDBLite consensus disorder prediction 27 49 - -
Viun10g02782 205 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 108 IPR036638 GO:0046983
Viun10g02782 205 Gene3D - 44 106 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02782 Viun-Chr10 40732020 40736911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02782 49 204 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.306 7.04e-31 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02782 - - vum:124835915 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g04099 5 48284398 48286542 Viun10g02782 10 40732020 40736911 PCT
Viun10g02782 10 40732020 40736911 Viun5g04100 5 48295216 48297129 PCT