Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02754 ATGGCTTTATGGTTCTGCTGCGGAAAAGTTTCGAACCGCGCAAGGCGAGGGAAAGAACAACCCACATGGCGAGTGTTTTCTTTGAAGGAATTACACTCTGCTACGAATAATTTCAACTATGACAACAAGCTTGGAGAGGGAAGCTTTGGCAGTGTGTACTGGGGCCAACTTTGGGATGGATCACAAATTGCGGTGAAAAGATTGAAAGTTTGGAGCAACAGAGCTGAGACAGAATTCACAGTTGAACTTGAAACCTTGGCAAGAATACGAGACAAGAATCTTCTAAGTCTTCGTGGCTACTGTGCTGAAGGACAGGAACGGTTAATTGTGTATGAATATATGCAAAATCTGAGTCTCTACTCTCATCTTCACGGACATCATTCATTCGAATGCTCTCTGGATTGGAATCGCCGGATGAATATCGCAATTGGTTCTGCTGAAGGAATTGTGTACCTTCACCACCAAGCAAGACCACATATCATTCACAGGGATATTAAATCAAGCAATGTGTTGCTGGATTCTGATTTCAAGGCCAGGGTTGCTGATTTTGGGTTTGCCAAGCTGATCCCTGATGGAGCAACACATGTGACTACAAGAGTTAAGGGAACTCTTGGCTACCTTGCACCAGAATATGCTATGTTAGGTAAAGCAAATGAGAGTTGTGATGTCTACAGTTTTGGTGTTCTTCTTCTAGAACTCGCTAGTGGCAGAAGACCAACCGAAAAGCTTAGTTCCACGGTGAGGCGATCGATAGTTGATTGGGCATTGCCATTGGTTTGTGAGAAGAAATTTAGTGAAATTGCCGATCCAAGACTAAATGGTAACTATGTGGAGGGAGAGCTTAAAAGAGTTGTTTTAGTTGCTCTTATGTGTGCTCAGGATCTACCTGAGAAGAGACCAACCATGCTTGATGTGGTGGAGCTACTCAAGGGAGAGTCTAGGGATAAATTTTCTCATATAGAGAACAGTGAAATGTTCAGAAACCCTCTAGCTGCAGAAACCAATAATGGAACATCATTGGCTGATGATAGATTAGACTATATCTCAGAAGAAAAAGAATTAGAACGTCCACTGAGAGAGAATGCTGAAGTATGA 1095 0.4265 MALWFCCGKVSNRARRGKEQPTWRVFSLKELHSATNNFNYDNKLGEGSFGSVYWGQLWDGSQIAVKRLKVWSNRAETEFTVELETLARIRDKNLLSLRGYCAEGQERLIVYEYMQNLSLYSHLHGHHSFECSLDWNRRMNIAIGSAEGIVYLHHQARPHIIHRDIKSSNVLLDSDFKARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKANESCDVYSFGVLLLELASGRRPTEKLSSTVRRSIVDWALPLVCEKKFSEIADPRLNGNYVEGELKRVVLVALMCAQDLPEKRPTMLDVVELLKGESRDKFSHIENSEMFRNPLAAETNNGTSLADDRLDYISEEKELERPLRENAEV 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02754 364 ProSitePatterns Protein kinases ATP-binding region signature. 44 66 IPR017441 GO:0005524
Viun10g02754 364 FunFam PTI1-like tyrosine-protein kinase At3g15890 10 113 - -
Viun10g02754 364 FunFam PTI1-like tyrosine-protein kinase At3g15890 114 325 - -
Viun10g02754 364 Gene3D Phosphorylase Kinase; domain 1 8 113 - -
Viun10g02754 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Viun10g02754 364 Gene3D Transferase(Phosphotransferase) domain 1 114 327 - -
Viun10g02754 364 SUPERFAMILY Protein kinase-like (PK-like) 20 309 IPR011009 -
Viun10g02754 364 PANTHER OS01G0253100 PROTEIN 19 315 - -
Viun10g02754 364 ProSiteProfiles Protein kinase domain profile. 38 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g02754 364 Pfam Protein tyrosine and serine/threonine kinase 40 308 IPR001245 GO:0004672|GO:0006468
Viun10g02754 364 SMART serkin_6 38 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02754 Viun-Chr10 40554028 40556690 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02754 25 305 Trihelix Transcription Factor Family AT1G68690 50.175 3.13e-92 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Viun10g02754 PK_Tyr_Ser-Thr 2.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02754 - - gmx:100814204 663.299