Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02736 ATGGTGCAATCAAGGAAATTCAGAGGTGTGAGGCAACGCCATTGGGGCTCGTGGGTTTCTGAGATTCGTCACCCATTATTGAAAAGGAGGGTGTGGCTTGGGACATTCGAGACAGCTGAGGAAGCAGCAAGAGCATACGATGAAGCAGCCATTTTGATGAGTGGAAGAAACGCTAAAACAAACTTCCCAGTTGGTGAAAACCAAGTGGTGAATCACACTGCTTCATCTTCTTCCTCCTCCACCACTACATTGTCTGCAGTTCTGAGTGCAAAGCTCAGGAAGTGCTGCAAATCACCCTCTCCTTCCCTCACTTGCTTAAGACTTGACACTGAAAATTCCCACATTGGGGTGTGGCAGAAGAGAGCAGGCCCTCGTTCTGACTCTAGCTGGATCATGATGGTTGAGCTGGAAAAAAGGAATAGCGACGTTGATCATGATCATGATCATCCCCATGACCATGATCATGGTCATTCTAACCATGACTATGATCGTGATTATGATCATGATCAAGATCAAGGTCCTTCTTCTAATTCTGAAGTTCCTGTAGTTGATCATCATGCCCCAGAAAAGATAAAGCCTGAGGAAGGTAATGGCATAGATGAGGAGCAGAGAATGGCTCTCCAGATGATAGAGGAGCTTCTGAATAGGAATTGA 654 0.4587 MVQSRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVGENQVVNHTASSSSSSTTTLSAVLSAKLRKCCKSPSPSLTCLRLDTENSHIGVWQKRAGPRSDSSWIMMVELEKRNSDVDHDHDHPHDHDHGHSNHDYDRDYDHDQDQGPSSNSEVPVVDHHAPEKIKPEEGNGIDEEQRMALQMIEELLNRN 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02736 217 MobiDBLite consensus disorder prediction 142 204 - -
Viun10g02736 217 MobiDBLite consensus disorder prediction 142 172 - -
Viun10g02736 217 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Viun10g02736 217 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 163 - -
Viun10g02736 217 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Viun10g02736 217 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Viun10g02736 217 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Viun10g02736 217 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Viun10g02736 217 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Viun10g02736 217 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Viun10g02736 217 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Viun10g02736 217 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Viun10g02736 217 MobiDBLite consensus disorder prediction 183 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02736 Viun-Chr10 40468733 40470204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02736 1 217 AP2-EREBP Transcription Factor Family AT1G15360 54.978 5.25e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun10g02736 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02736 - - gmx:100796962 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02736 10 40468733 40470204 Viun10g02736 10 40468733 40470204 ECH