Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02733 ATGGGAGAATTGAAGGACGCCGAGACTTACGAGGAAGAGCTCCTCGATTACGAAGAAGAAGATGAGAAAGCTCCCGATTCTGCCAAGCCTGCAGAATCCGGCAAGAAGGGTTATGTTGGCATCCATAGTTCGGGTTTTCGAGACTTCCTGTTGAAGCCAGAGCTTCTGCGAGCCATTGTAGATTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATGCATCCCTCAAGCAATCTTAGGAATGGATGTTATTTGTCAAGCAAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTTTCTACACTTCAGCAAGTTGATCCTGTTCCTGGTCAAGTTGCAGCTCTTGTTCTTTGCCACACAAGAGAACTGGCTTATCAGATTTGCCATGAATTTGAGAGATTCAGTACATATCTTCCTGATATAAAGGCTGCTGTTTTCTATGGTGGCGTCAATATCAAGGTTCACAAAGAATTGCTCAAGAATGAATGTCCTCATATTGTTGTTGGAACACCAGGGAGGATTCTTGCTTTGGCTAGAGATAAGGACCTTGGTTTAAAGAACGTGAGGCATTTCATACTTGATGAGTGTGACAAGATGCTTGAATCACTTGATATGAGAAGAGACGTCCAGGAGATTTTCAAATTGACTCCTCATGATAAACAAGTGATGATGTTTTCAGCCACACTTAGTAAAGAGATTCGACCCGTTTGCAAGAAATTTATGCAAGATCCTATGGAAATCTATGTGGATGATGAGGCCAAGTTGACGCTTCATGGTCTTGTCCAGCACTACATCAAATTGCAAGAGTCAGAGAAGAACCGGAAGTTGAATGATCTTCTTGATGCTCTGGATTTCAACCAAGTAGTTATTTTTGTCAAGAGTGTTAGCAGAGCAGCAGAGTTGAACAAGTTGCTTGTGGAGTGTAACTTCCCATCCATCTGCATACATTCTGCAATGTCACAGGAAGAGAGATTGAAACGATACAAAGGCTTCAAGGAAGGGAAGCAAAGGATTCTCGTGGCAACTGACTTAGTAGGGAGGGGAATTGACATAGAACGTGTTAATATAGTTATTAATTATGACATGCCTGATTCTGCCGATACTTACTTGCACAGGGTAGGAAGAGCAGGTAGATTTGGCACGAAGGGGCTTGCTATTACTTTTGTCTCCTCCACTGCCGACTCTGAAGTTCTTAATCAGGTGCAATCTAGGTTTGAAGTTGATATTAAGGAGCTTCCTGAACAAATTGACACTTCGACATACATGCCAAATTGA 1278 0.4233 MGELKDAETYEEELLDYEEEDEKAPDSAKPAESGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQVDPVPGQVAALVLCHTRELAYQICHEFERFSTYLPDIKAAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQESEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSAMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTADSEVLNQVQSRFEVDIKELPEQIDTSTYMPN 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02733 425 SMART helicmild6 300 381 IPR001650 -
Viun10g02733 425 Gene3D - 40 256 IPR027417 -
Viun10g02733 425 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 276 421 IPR001650 -
Viun10g02733 425 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 75 248 IPR014001 -
Viun10g02733 425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 395 IPR027417 -
Viun10g02733 425 Gene3D - 257 425 IPR027417 -
Viun10g02733 425 Pfam Helicase conserved C-terminal domain 274 381 IPR001650 -
Viun10g02733 425 CDD SF2_C_DEAD 261 390 - -
Viun10g02733 425 CDD DEADc_DDX39 43 250 - -
Viun10g02733 425 FunFam DEAD-box ATP-dependent RNA helicase 56-like 32 250 - -
Viun10g02733 425 SMART ultradead3 63 264 IPR014001 -
Viun10g02733 425 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 44 72 IPR014014 GO:0003724
Viun10g02733 425 FunFam DEAD-box ATP-dependent RNA helicase 257 425 - -
Viun10g02733 425 Pfam DEAD/DEAH box helicase 69 234 IPR011545 GO:0003676|GO:0005524
Viun10g02733 425 MobiDBLite consensus disorder prediction 1 35 - -
Viun10g02733 425 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 42 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02733 Viun-Chr10 40451384 40456070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02733 1 425 Eukaryotic Initiation Factors Gene Family AT5G11200 82.479 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02733 K12812 - gmx:100799082 823.542