Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02699 ATGGTTGGAGGTTCCTTGGGAGGGTTGCAAGAGCACCTCAAGTTAGCCAGAGACTACGCCGTGGAAGGACTCTACGACACCTCCATCATCTTCTTCGACGGTGCCCTTGCTCAGATCAACAAACACCTAAGCACCGTCGAGGACCCTTTGATTCGCGCAAAATGGATGAATGTGAAGAAAGCGCTTTCGGAAGAAACCGAGGTTGTGAAACAGTTGGATGCGGAGAGAAGGGCTTTCAAAGAAAACCCAATTGGGAGACGCGCCGTTTCGCCTCCCATTGCTGCCAAGTCCTCGTCTTTTGTTTTCCAGCCGTTGGATGAGTACCCCACTTCATCAAGCGGTCCTGCTCCGTTTGATGATCCTGATGTATGGCGCCCACCCAGTAGGGATACCAGTAGGAGACCCGCCAGGGCGGGTCAAGTTGGTACCCGCAAATCCCCCCAAGATGGGGCCTGGGCTCGAGGTGCTACTGCTAGAAGTGCTGCAACTGGGCGTGGTGGTGCTAAAGGTGGGGGTGCTACTAGTAGGGTTAACTCGGGGACACGAGCATCTGCTGCAGGAAAGAAAGGCAATGTTTCTGGAAAGTCTACCAAGACGGATACTGCAGCTGTAACTAATGGACAAAATGGTGATTCTGAAGATGGTAAGTCAAAGAAGGGTCAATATGAAGGTCCCGATCCTGAATTGGCTGCAATGCTTGAAAGGGATGTGTTAGAAACCTCTCCTGGAGTTAGATGGGATGATGTTGCAGGACTTACTGAAGCAAAAAGACTTCTAGAAGAAGCTGTTGTGCTTCCCTTGTGGATGCCTGAATATTTCCAGGGAATCAGGAGGCCATGGAAAGGTGTTCTCATGTTTGGACCTCCAGGAACCGGGAAGACACTTCTTGCTAAAGCAGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTATCTTCTGCAACTTTGGCTTCAAAATGGCGTGGTGAGAGTGAACGCATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGCACAATATTTATTGATGAAATTGATTCTCTATGCAATGCAAGGGGGGCATCTGGGGAGCATGAATCATCTAGAAGGGTGAAATCTGAACTTCTTGTTCAGGTTGATGGTGTAAGCAATAGTGCCACAAATGAAGATGGTAGCCGTAAAATAGTAATGGTTTTGGCCGCAACTAACTTCCCATGGGATATAGATGAGGCATTAAGGAGAAGGCTGGAAAAACGTATATATATTCCTCTTCCAAATTTCGAGAGTCGTAAAGAGCTGATCCGGATAAATTTGAAGACTGTTGAGGTGGCGGCTGATGTGAATATAGATGAAGTGGCTCGGCGGACAGAGGGATACAGTGGAGATGATTTGACTAATGTGTGTCGTGACGCCTCCTTGAATGGTATGAGGCGAAAGATAGCAGGAAAGACTCGTGATGAAATCAAGAACATGTCCAAGGATGAGATTTCAAAGGACCCTGTTGCCATGTGTGACTTTGAAGAAGCTTTGGTAAAGGTCCAACGAAGTGTTTCTCAGGCCGACATTGAACGCCATGAGAAGTGGTTTACCGAGTTTGGATCAGCATAG 1596 0.4781 MVGGSLGGLQEHLKLARDYAVEGLYDTSIIFFDGALAQINKHLSTVEDPLIRAKWMNVKKALSEETEVVKQLDAERRAFKENPIGRRAVSPPIAAKSSSFVFQPLDEYPTSSSGPAPFDDPDVWRPPSRDTSRRPARAGQVGTRKSPQDGAWARGATARSAATGRGGAKGGGATSRVNSGTRASAAGKKGNVSGKSTKTDTAAVTNGQNGDSEDGKSKKGQYEGPDPELAAMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSATNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAADVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALVKVQRSVSQADIERHEKWFTEFGSA 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02699 531 Gene3D - 241 522 IPR027417 -
Viun10g02699 531 ProSitePatterns AAA-protein family signature. 392 411 IPR003960 GO:0005524|GO:0016887
Viun10g02699 531 Pfam AAA+ lid domain 442 483 IPR041569 -
Viun10g02699 531 FunFam Katanin p60 ATPase-containing subunit A1 421 507 - -
Viun10g02699 531 Gene3D - 4 80 - -
Viun10g02699 531 MobiDBLite consensus disorder prediction 106 225 - -
Viun10g02699 531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 527 IPR027417 -
Viun10g02699 531 MobiDBLite consensus disorder prediction 174 211 - -
Viun10g02699 531 CDD Kp60-NTD 9 75 - -
Viun10g02699 531 FunFam Katanin p60 ATPase-containing subunit A1 4 80 - -
Viun10g02699 531 Pfam ATPase family associated with various cellular activities (AAA) 283 420 IPR003959 GO:0005524|GO:0016887
Viun10g02699 531 SMART AAA_5 279 422 IPR003593 GO:0016887
Viun10g02699 531 FunFam Katanin p60 ATPase-containing subunit A1 241 409 - -
Viun10g02699 531 Gene3D - 421 507 - -
Viun10g02699 531 Pfam Vps4 C terminal oligomerisation domain 484 529 IPR015415 -
Viun10g02699 531 PANTHER AAA DOMAIN-CONTAINING 25 530 - -
Viun10g02699 531 Coils Coil 62 82 - -
Viun10g02699 531 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 531 IPR028596 GO:0008017|GO:0008568|GO:0051013
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02699 Viun-Chr10 40260067 40264365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02699 204 523 Calmodulin-binding Proteins AT3G56690 37.278 1.62e-51 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02699 K07767 - gmx:100787634 924.465