Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02696 ATGGCCAAAGAAGGTCTTGGACTTGAAATCACGGAGCTGAGATTAGGTCTACCCGATGCTGAACAACATGTGAGTGTGGCGAACAAGAACAATAAGAGGGCGTTCTCGGAGATTGATGATGTTGGAGATCAAAACAGCTCCTCCGGCGGCGGCGGTGACCGGAAAATGGAGAACAAGAACCAGGTGGTGGGGTGGCCTCCGGTGTGCTCGTACAGGAAGAAGAACAGTGTGAACGAAGCCTCGAAAATGTACGTTAAGGTTAGCATGGATGGTGCTCCTTTCTTGCGTAAAATGGATCTGGGTATGCACAAAGGATACTCCGATTTAGCCTTCGCTTTGGAGAAGCTCTTTGGTTGCTATGGAATGGTGGAAGCATTGAAGAATGCAGAGAATAGTGAACACGTGCCCATTTATGAGGACAAAGATGGTGACTGGATGCTTGTTGGAGATGTCCCATGGGAAATGTTCATGGAGTCATGCAAGAGGTTGAGGATTATGAAGAGAGCAGATGCAAAGGGGTTCGATTTGCAACCAAAAGGATCTTTAAAGGGATTCATAGAAAGCGTGGGAAAGTGA 576 0.474 MAKEGLGLEITELRLGLPDAEQHVSVANKNNKRAFSEIDDVGDQNSSSGGGGDRKMENKNQVVGWPPVCSYRKKNSVNEASKMYVKVSMDGAPFLRKMDLGMHKGYSDLAFALEKLFGCYGMVEALKNAENSEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKRADAKGFDLQPKGSLKGFIESVGK 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02696 191 SUPERFAMILY CAD & PB1 domains 75 167 - -
Viun10g02696 191 ProSiteProfiles PB1 domain profile. 82 170 IPR000270 GO:0005515
Viun10g02696 191 Pfam AUX/IAA family 53 173 IPR033389 -
Viun10g02696 191 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 171 IPR003311 GO:0005634|GO:0006355
Viun10g02696 191 Gene3D - 76 178 - -
Viun10g02696 191 MobiDBLite consensus disorder prediction 35 59 - -
Viun10g02696 191 MobiDBLite consensus disorder prediction 40 54 - -
Viun10g02696 191 FunFam Auxin-responsive protein 77 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02696 Viun-Chr10 40237833 40242125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02696 78 189 B3 DNA Binding Superfamily AT4G23980 32.143 5.18e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Viun10g02696 AUX_IAA 1.3e-42 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02696 K14484 - gmx:547784 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02696 10 40237833 40242125 Viun5g03959 5 47512248 47514793 PCT