Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun10g02696 | ATGGCCAAAGAAGGTCTTGGACTTGAAATCACGGAGCTGAGATTAGGTCTACCCGATGCTGAACAACATGTGAGTGTGGCGAACAAGAACAATAAGAGGGCGTTCTCGGAGATTGATGATGTTGGAGATCAAAACAGCTCCTCCGGCGGCGGCGGTGACCGGAAAATGGAGAACAAGAACCAGGTGGTGGGGTGGCCTCCGGTGTGCTCGTACAGGAAGAAGAACAGTGTGAACGAAGCCTCGAAAATGTACGTTAAGGTTAGCATGGATGGTGCTCCTTTCTTGCGTAAAATGGATCTGGGTATGCACAAAGGATACTCCGATTTAGCCTTCGCTTTGGAGAAGCTCTTTGGTTGCTATGGAATGGTGGAAGCATTGAAGAATGCAGAGAATAGTGAACACGTGCCCATTTATGAGGACAAAGATGGTGACTGGATGCTTGTTGGAGATGTCCCATGGGAAATGTTCATGGAGTCATGCAAGAGGTTGAGGATTATGAAGAGAGCAGATGCAAAGGGGTTCGATTTGCAACCAAAAGGATCTTTAAAGGGATTCATAGAAAGCGTGGGAAAGTGA | 576 | 0.474 | MAKEGLGLEITELRLGLPDAEQHVSVANKNNKRAFSEIDDVGDQNSSSGGGGDRKMENKNQVVGWPPVCSYRKKNSVNEASKMYVKVSMDGAPFLRKMDLGMHKGYSDLAFALEKLFGCYGMVEALKNAENSEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKRADAKGFDLQPKGSLKGFIESVGK | 191 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun10g02696 | 191 | SUPERFAMILY | CAD & PB1 domains | 75 | 167 | - | - | |
Viun10g02696 | 191 | ProSiteProfiles | PB1 domain profile. | 82 | 170 | IPR000270 | GO:0005515 | |
Viun10g02696 | 191 | Pfam | AUX/IAA family | 53 | 173 | IPR033389 | - | |
Viun10g02696 | 191 | PANTHER | AUXIN-RESPONSIVE PROTEIN IAA17 | 7 | 171 | IPR003311 | GO:0005634|GO:0006355 | |
Viun10g02696 | 191 | Gene3D | - | 76 | 178 | - | - | |
Viun10g02696 | 191 | MobiDBLite | consensus disorder prediction | 35 | 59 | - | - | |
Viun10g02696 | 191 | MobiDBLite | consensus disorder prediction | 40 | 54 | - | - | |
Viun10g02696 | 191 | FunFam | Auxin-responsive protein | 77 | 178 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun10g02696 | Viun-Chr10 | 40237833 | 40242125 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun10g02696 | 78 | 189 | B3 DNA Binding Superfamily | AT4G23980 | 32.143 | 5.18e-11 | 58.9 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | AUX/IAA | Viun10g02696 | AUX_IAA | 1.3e-42 | CL0072 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun10g02696 | K14484 | - | gmx:547784 | 330.487 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Viun10g02696 | 10 | 40237833 | 40242125 | Viun5g03959 | 5 | 47512248 | 47514793 | PCT |