LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun10g02668	ATGTCGTCTCCGTCGCCGGCGGAGACTGCTTCCGGCACTAACTCCACTGCCACTGCTTCTCCTTCTCCTCCTCTTCCGGATGAAACACCTCTGGTACCTAACACCACTGTCTCCCCTCCTCCGCCTCCCGACACCACCAATGCCGCCGTTAGTCCTCCTCCGCCGTTAGCCGCAGCTCCGTCTAGTCTCAGTGGCAGCGGCTTGTCGCCGGGTACATTGAGTGGAATAATTATAGGGGCCGTGTTAGGTGCAGTAGGTATGCTTATCGTTGGGGGCGTTTTCTTTTGCGTCTATAGGAATTGGAAAAAGAAGAGAAGCCAGAACAACTACTCTCAACCGTCTCAACCGAAAGCTGACATGGCTGGTGTTTCTCCAACGCCATATGGAAAAGGAGGCTTGTCGCCCAAGCCTACTCCAGGGGGTTTAGGGAATCAGAAACTGTCATCCTCTGGTCTCCCCACTCCCACTGTCAATTCTTCAGGCACTGCAAGTAGTTTGGGTTCCGAGAAGGTGAAGCCTTCACCTGGCATTTCCTTGGCGCTATCATCTCAAAACACTTTTACACACGATGAATTAGTTATGGCAACGGATGGATTCTCCTACTCAAATCTTCTTGGTCAAGGTGGTTTTGGCTATGTCCACAAAGGAGTTCTCCCAAATGGGAAAATTGTTGCAGTCAAGCAGTTGAAATCTGAGAGTAGACAAGGGGAGCGTGAGTTCCATGCAGAAGTCGAGGTCATTAGCCGTGTGCATCACAGACACCTTGTTTCCCTTGTTGGTTACTGCATAGCAGACAACCAGAAGATGCTTGTCTACGAGTATGTGCCAAATAATACCCTAGAATTTCATTTGCATGGAAAAGACAGACCACCTATGGACTGGTCAACAAGGATGAAGATTGCTATAGGATCTGGAAAAGGATTGGCATATCTGCATGAGGACTGTAATCCCAAAATCATACACCGAGACATCAAGGCATCTAACATTCTTATTGATGATAGCTTTGAGGCTAAGGTTGCAGATTTTGGACTTGCAAAGTTTTCATCAGACACAGAAACACATGTTTCTACTCGAGTGATGGGAACTTTTGGATACATGGCTCCAGAATATGCTGCTAGTGGGAAACTAACAGAAAAGTCAGATGTTTTCTCCTTTGGTGTTGTGCTTTTGGAGTTGATCACTGGACGGAAACCCGTTGATAAAACTCATCCCTTCTTAGATGACAGCATGGTTGAATGGGCTAGGCCTTTACTCTCTCAAGCTTTTGAAAATGGAAACTTTGATGGACTTGTTGATCCAAAGTTGCAGAAAAATTACAATCATGATGAGATGATTCGAATGGCCGCTTGTGCTGCAAGTTGTGTGCGCCATTCAGCCAGGCTTCGGCCTCGAATGAGCCAGGTTGTTCGAGCTCTGGAAGGAAATATTTCTCTAGAAGATCTAAATGAGGGGAGCGCTCCTGGACACAGCAGAGTTTTTGGTTCCTTTGAGGGTTCTAGCTATGACAGCATCCAATACAGTGAAGACATGAAGAACTTCAGGAAGCTGGCACTGGAAAGCCAAGAGCAAGGTATTAGTGAGTACAGTGGTCCCAGCAGTGATTACGGTCGACATCCATCTGTCTCTACCAGTTCGGGACAGCAAAATACGCAGGAAATTGAATTGGGGGAACGTGAAGGGTAG	1683	0.473	MSSPSPAETASGTNSTATASPSPPLPDETPLVPNTTVSPPPPPDTTNAAVSPPPPLAAAPSSLSGSGLSPGTLSGIIIGAVLGAVGMLIVGGVFFCVYRNWKKKRSQNNYSQPSQPKADMAGVSPTPYGKGGLSPKPTPGGLGNQKLSSSGLPTPTVNSSGTASSLGSEKVKPSPGISLALSSQNTFTHDELVMATDGFSYSNLLGQGGFGYVHKGVLPNGKIVAVKQLKSESRQGEREFHAEVEVISRVHHRHLVSLVGYCIADNQKMLVYEYVPNNTLEFHLHGKDRPPMDWSTRMKIAIGSGKGLAYLHEDCNPKIIHRDIKASNILIDDSFEAKVADFGLAKFSSDTETHVSTRVMGTFGYMAPEYAASGKLTEKSDVFSFGVVLLELITGRKPVDKTHPFLDDSMVEWARPLLSQAFENGNFDGLVDPKLQKNYNHDEMIRMAACAASCVRHSARLRPRMSQVVRALEGNISLEDLNEGSAPGHSRVFGSFEGSSYDSIQYSEDMKNFRKLALESQEQGISEYSGPSSDYGRHPSVSTSSGQQNTQEIELGEREG	560

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun10g02668	560	Gene3D	Transferase(Phosphotransferase) domain 1	275	484	-	-
	Viun10g02668	560	SUPERFAMILY	Protein kinase-like (PK-like)	174	472	IPR011009	-
	Viun10g02668	560	ProSitePatterns	Protein kinases ATP-binding region signature.	205	227	IPR017441	GO:0005524
	Viun10g02668	560	MobiDBLite	consensus disorder prediction	141	171	-	-
	Viun10g02668	560	ProSiteProfiles	Protein kinase domain profile.	199	478	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun10g02668	560	MobiDBLite	consensus disorder prediction	105	171	-	-
	Viun10g02668	560	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	319	331	IPR008271	GO:0004672\|GO:0006468
	Viun10g02668	560	MobiDBLite	consensus disorder prediction	1	66	-	-
	Viun10g02668	560	MobiDBLite	consensus disorder prediction	518	560	-	-
	Viun10g02668	560	FunFam	Proline-rich receptor-like protein kinase PERK1	275	483	-	-
	Viun10g02668	560	MobiDBLite	consensus disorder prediction	105	119	-	-
	Viun10g02668	560	Pfam	Protein tyrosine and serine/threonine kinase	202	471	IPR001245	GO:0004672\|GO:0006468
	Viun10g02668	560	MobiDBLite	consensus disorder prediction	522	553	-	-
	Viun10g02668	560	SMART	serkin_6	199	445	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun10g02668	560	MobiDBLite	consensus disorder prediction	23	59	-	-
	Viun10g02668	560	Gene3D	Phosphorylase Kinase; domain 1	162	274	-	-
	Viun10g02668	560	MobiDBLite	consensus disorder prediction	1	22	-	-
	Viun10g02668	560	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	88	519	IPR047117	-
	Viun10g02668	560	FunFam	Proline-rich receptor-like protein kinase PERK8	171	274	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun10g02668	Viun-Chr10	40050356	40055123	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun10g02668	42	546	Trihelix Transcription Factor Family	AT1G70460	51.440	1.38e-162	478

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Viun10g02668		PK_Tyr_Ser-Thr	3.4e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun10g02668	-		-	ccaj:109808169	834.713