Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02660 ATGGGAGTTAACATGTCAAACACACCACCTCACACCAAAGACTTGTTTTCTTCTCCAACTCTCTCTCTTAGTCTATTAGTTTTTGTTGTATTGGATGTGAAGGCTGGGATTTTCCGGCATGCCGAAGAGGCGGCGACGACGTCCGGCATGGTGGTTGCCGGCGTCGAGGTCCGGCGAGAGGACACTGTAGAGATTAGCAGTGACAACTCAGGACCTGTGAGATCCAGGTCAGAAGAAGATTTTGATGGAGAAGGTGCTCACGAGGATGACGATGATGAGAACAACGATGATGGTGATAGGAGTAAGAAGAGGAAGAGAAAGTATCACAGACACACCGTTGAACAGATCAGAGAAATGGAAGCGCTTTTCAAGGAATCACCGCATCCTGATGAAAAGCAGAGGCAACAACTCAGTCAGCAACTTGGCCTTGCTCCGAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAGGCAATACAAGAGCGACATGAAAACTCGTTGTTGAAGTCAGAATTAGACAAGCTGAAGGAGGAAAACAAGACCATGCGAGAGATCATCAACAAATCTTGTTGTCCCAATTGCGGTATGGTAACGGCTACCATAGAAGCTTCCATGTCCACTGAAGAAAAACAACTCCTTATTGAAAATGTCAAACTCAAAGCTGAGGTAGAGAAACTCCGGGCAACGTTGGGAAAATATTCACCAACGTCTCCTGCAACTTCTTCTGGTCGTGACGAGGAAGAGAATAGAAGCTCTTTGGACTTTTACAATGGAGTTTTCGGGCTCGAGAAATCAAGGATAATGGAAATAGTTAACCGGGCAAGTGAAGAGCTCATAAAGATGGCAAACATGGGGGAACCATTGTGGGTTCGTAGCGTTGAAACAGGTCGTGAAATACTTAACTATGATGAATATGTGAAGGAGTTCGCAGCTGAAAATTCGAGCAGTGACAAGCCAAAAACATTCATCGAAGCATCGAGAGACTCCGAGGTTGTTTTCATGGATCTCCCTCATCTGCTCCAAACCTTTCTAGATGTGAATCAGTGGAAGGAAATGTTTCCATGCTTGATATCAAAGGCTGCAACCGTTGATGTTATGTTCAATGGAGAAGGTTCCAACAGGAATGGTGCAGTGCAATTGATGTTTGCTGAGCTGCAAATGTTAACTCCAATGGTGCCCACCAGAGAAGTGTATTTTGTGAGGTGCTGCAAGCAGTTGAGTGATGAACAGTGGGCAATAATTGATGTATCTATAGACAAAGTTGAAGACAACATCGATGCATCCCTTGTGAAATGCAGAAAACGCCCATCTGGTTGCATTATTGAGGATAAGTCAAACGGGCACTGCAAGGTGATATGGGTGGAGCACTTGGAGTGCCAGAAGAGCACAATCCACACATTGTATCGAACCATTGTAAACAGTGGTCTAGCTTTTGGGGCAAGGCATTGGATAGCCACACTGCAACTTCAATGCGAGCGTTTGGTTTTTAACATGGCAACAAATGTTCCTACGAAGGATTCAACTGGTGTTGCAACGTTGGCTGGGAGGAAAAGCATTTTAAAGTTGGCGCAAAGAATGACATGGAGTTTCTGCCATGCAGTTGGTGCATCAAGTTTCCATACTTGGACCAAGTTCACGAGTAAAACAGGAGAAGATATAAGAATTAGCTCTAGGAAGAACTTGAATGACCCTGGTGAACCTCTTGGGGTTATCTTGTCTGCGGTTTCTTCTGTGTGGCTTCCTGTCTCTCCCAATGCACTGTTTGATTTCTTGAGGGATGAAGCTCGTCGAAGCGAGTGGGATATGATGTCCTATGGTGGGTCAGTGCAGTCGATTGCAAATTTAGCCAAAGGAAAAGACCGAGGCAATGCTGTAAACATCCAAAAAATAGAATCAAAAGAGAATAGTGTGTGGGTAGTGCAAGATAGCTGCACAAGTGGCTATGAATCAATGGTGGCATATGCTCCTGTGGATTTTTCTGGTCTCCAATCTGTTCTATCAGGATGTGATTCAAGCAACGTTGCGATTTTGCCGTCAGGATTCTCAATTCTTCCAGATGGGGTTGAGGGAAGGGCATTGGTGATTAGGTCAAGGCCAGAAGAAAAAGGAACAGAAGGAGGGTCTTTGTTTACAATGGTGTTTCAGATGCTTGTTAATGCTTCTCCTACAGCAAAGTTAACAATGGAGTCTGTGGAATCAGCCAATAATCTTGTGTCTTGTACATTAAGAAACATTAGAACAAGTTTACAGTGTGAAGATGGTTAG 2274 0.4437 MGVNMSNTPPHTKDLFSSPTLSLSLLVFVVLDVKAGIFRHAEEAATTSGMVVAGVEVRREDTVEISSDNSGPVRSRSEEDFDGEGAHEDDDDENNDDGDRSKKRKRKYHRHTVEQIREMEALFKESPHPDEKQRQQLSQQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKSELDKLKEENKTMREIINKSCCPNCGMVTATIEASMSTEEKQLLIENVKLKAEVEKLRATLGKYSPTSPATSSGRDEEENRSSLDFYNGVFGLEKSRIMEIVNRASEELIKMANMGEPLWVRSVETGREILNYDEYVKEFAAENSSSDKPKTFIEASRDSEVVFMDLPHLLQTFLDVNQWKEMFPCLISKAATVDVMFNGEGSNRNGAVQLMFAELQMLTPMVPTREVYFVRCCKQLSDEQWAIIDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSTIHTLYRTIVNSGLAFGARHWIATLQLQCERLVFNMATNVPTKDSTGVATLAGRKSILKLAQRMTWSFCHAVGASSFHTWTKFTSKTGEDIRISSRKNLNDPGEPLGVILSAVSSVWLPVSPNALFDFLRDEARRSEWDMMSYGGSVQSIANLAKGKDRGNAVNIQKIESKENSVWVVQDSCTSGYESMVAYAPVDFSGLQSVLSGCDSSNVAILPSGFSILPDGVEGRALVIRSRPEEKGTEGGSLFTMVFQMLVNASPTAKLTMESVESANNLVSCTLRNIRTSLQCEDG 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02660 757 Gene3D - 90 174 - -
Viun10g02660 757 MobiDBLite consensus disorder prediction 234 253 - -
Viun10g02660 757 CDD START_ArGLABRA2_like 267 495 - -
Viun10g02660 757 ProSitePatterns 'Homeobox' domain signature. 137 160 IPR017970 GO:0000981|GO:0006355
Viun10g02660 757 MobiDBLite consensus disorder prediction 62 111 - -
Viun10g02660 757 ProSiteProfiles 'Homeobox' domain profile. 102 162 IPR001356 GO:0003677
Viun10g02660 757 SMART HOX_1 104 166 IPR001356 GO:0003677
Viun10g02660 757 FunFam Homeobox-leucine zipper protein HDG1 89 178 - -
Viun10g02660 757 Pfam START domain 273 496 IPR002913 GO:0008289
Viun10g02660 757 FunFam Homeobox-leucine zipper protein GLABRA 2 272 495 - -
Viun10g02660 757 CDD homeodomain 105 160 IPR001356 GO:0003677
Viun10g02660 757 SMART START_1 272 496 IPR002913 GO:0008289
Viun10g02660 757 SUPERFAMILY Homeodomain-like 94 163 IPR009057 -
Viun10g02660 757 Pfam Homeodomain 105 160 IPR001356 GO:0003677
Viun10g02660 757 SUPERFAMILY Bet v1-like 265 496 - -
Viun10g02660 757 Coils Coil 212 232 - -
Viun10g02660 757 ProSiteProfiles START domain profile. 263 499 IPR002913 GO:0008289
Viun10g02660 757 Gene3D - 342 494 IPR023393 -
Viun10g02660 757 Coils Coil 161 191 - -
Viun10g02660 757 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 102 752 IPR042160 -
Viun10g02660 757 SUPERFAMILY Bet v1-like 526 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02660 Viun-Chr10 40016578 40022423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02660 65 756 Homeobox Transcription Factor Family AT1G79840 65.050 0.0 908
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun10g02660 START 3.3e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02660 K09338 - gmx:100806193 1251.88