Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02643 ATGTCTACACCCTTTGAACATGATTACATAGGCTTAGCAGAAACTCCATACATGGAGAAAAGCTGTGATAAGATATCATCTTCAGTTTCATCCAACCTTTCATCTGAGGATGAGAACAGTTCATCTCTGAACTTCAAGGAGACTGAGCTGAGGCTTGGTCTACCAGGTTGTGAGTTTTCTGAGAACAAACCAGGAGCTGCAGGGATTTCTCTTTTTGGCAAGGATTTGCAGAGTAGTGGCTATTCTGCTTCCTCAATCCCTTCCAATAAGAATCTCAAAAGGGGTTTCTCTGATGCCATTAGTTCCTCCTCATCCTCTTCTGGGAAATGGATTTTCTCAGCCAGTGATGCATCTGGGGATGATTTGAGAAATGGGTGCAACAAAGAGGTTGGTTTGGTTCCTCACTCTGAGAAGCCACCTCAGGTTTCTGCAACAATTGAACATGCCACTGCTCCTGCTGCAAAAGCACAAGTTGTGGGATGGCCACCAATTCGATCTTTTCGGAAGAACACAATGGCTTATAATATGGCAAAAAGCAACACTGAAACTGAGGAGAAATCAAGAGTTGGTTGTCTTTATGTTAAGGTGAGCATGGATGGTGCCCCTTATCTCAGAAAGGTTGATCTGAAAACCCACTGCAACTATATTGAACTTTCTTCTGCTCTTGAGAAAATGTTCAGCTGCTTCACCATTGGTCAATGCAGTTCACGTGGAGTTTCTGGGAAAGAGGGATTGAGTGAGAGAGCTTTCAGGGATCTTGTTGATGGCTCTGAATATGTTCTTACTTATGAAGATAAAGATGGGGATTGGATGCTAGTGGGTGATGTGCCTTGGGAGATGTTCACTGAGTCGTGTAAGAAATTGAGGATAATGAAAGGTTCTGAGGCAATTGGATTAGCTCCAAGGGCAATGGAAAAATCTAGGAGCCAATACTAG 936 0.4327 MSTPFEHDYIGLAETPYMEKSCDKISSSVSSNLSSEDENSSSLNFKETELRLGLPGCEFSENKPGAAGISLFGKDLQSSGYSASSIPSNKNLKRGFSDAISSSSSSSGKWIFSASDASGDDLRNGCNKEVGLVPHSEKPPQVSATIEHATAPAAKAQVVGWPPIRSFRKNTMAYNMAKSNTETEEKSRVGCLYVKVSMDGAPYLRKVDLKTHCNYIELSSALEKMFSCFTIGQCSSRGVSGKEGLSERAFRDLVDGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKKLRIMKGSEAIGLAPRAMEKSRSQY 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02643 311 Gene3D - 185 305 - -
Viun10g02643 311 ProSiteProfiles PB1 domain profile. 191 293 IPR000270 GO:0005515
Viun10g02643 311 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 42 298 IPR003311 GO:0005634|GO:0006355
Viun10g02643 311 Pfam AUX/IAA family 47 302 IPR033389 -
Viun10g02643 311 FunFam Auxin-responsive protein 186 303 - -
Viun10g02643 311 SUPERFAMILY CAD & PB1 domains 191 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02643 Viun-Chr10 39913680 39916004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02643 179 296 B3 DNA Binding Superfamily AT2G46530 32.773 4.83e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Viun10g02643 AUX_IAA 7e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02643 K14484 - gmx:100804782 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02643 10 39913680 39916004 Viun10g02643 10 39913680 39916004 ECH