Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02642 ATGGGTGGCATTGCCTTCGGACGTTTGGATGATTCTTTCGGTTTAACCTCAATCAAGGCCTATATTGCAGAGTTCATTTCAACCTTGCTCTTTGTTTTTGCCGGTGTTGGATCAGCCATAGCCTATGGTAAGTTGACATCAGATGCAGCACTTGATCCTGCTGGGTTACTGGCGGTTGCTATTTGCCACGGTTTTGCACTTTTTGTTGCAGTTTCTGTTGGTGCCAACATCTCTGGTGGCCATGTCAACCCTGCCGTGACTTTTGGATTGGCTCTTGGTGGCCACATCACCATCCTCACCGGCATCTTCTACTGGATTGCACAGCTTCTTGGTTCCATAGTCGCATGTTTTCTTCTCAGCTATGTCACAGGAGGCTTGGCAATTCCAACCCACAGTGTGGCTTCTGGGGTTGGAGTTGTTCAAGGAGTTGTTACAGAGATCATAATCACATTTGGTTTGGTGTACACTGTGTATGCTACAGCAGCTGATCCTAAGAAGGGTTCATTGGGCACCATTGCACCCATTGCCATTGGTTTCATTGTTGGTGCGAATATTTTAGCAGCAGGACCATTCTCTGGTGGGTCGATGAACCCTGCACGCTCCTTTGGGCCTGCAGTTGTGAGTGGTGACTTCCATGACAACTGGATCTACTGGGTTGGACCTCTTATTGGTGGTGGTTTGGCTGGTCTCATCTATGGCAATGTGTTCATTCGCTCTGACCATGCACCTCTTTCCTCTGAATTTTGA 747 0.4806 MGGIAFGRLDDSFGLTSIKAYIAEFISTLLFVFAGVGSAIAYGKLTSDAALDPAGLLAVAICHGFALFVAVSVGANISGGHVNPAVTFGLALGGHITILTGIFYWIAQLLGSIVACFLLSYVTGGLAIPTHSVASGVGVVQGVVTEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGPLIGGGLAGLIYGNVFIRSDHAPLSSEF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02642 248 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun10g02642 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Viun10g02642 248 Gene3D Glycerol uptake facilitator protein. 2 246 IPR023271 -
Viun10g02642 248 SUPERFAMILY Aquaporin-like 16 241 IPR023271 -
Viun10g02642 248 PANTHER AQUAPORIN-8 4 241 IPR034294 -
Viun10g02642 248 FunFam Probable aquaporin TIP1-1 2 248 - -
Viun10g02642 248 CDD MIP 19 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun10g02642 248 Pfam Major intrinsic protein 16 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun10g02642 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun10g02642 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun10g02642 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun10g02642 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun10g02642 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun10g02642 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02642 Viun-Chr10 39908647 39910458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02642 1 246 Major Intrinsic Protein MIP AT3G16240 80.972 3.24e-143 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02642 K09873 - gmx:100306092 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02642 10 39908647 39910458 Viun10g02642 10 39908647 39910458 ECH