Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02634 ATGACACAAACACCAACCTCGTCCGAAACAACCTCTTCTACGTCGTCGCCGTCCACGCATTCGGGCTCAAAGGCTCAGGCCCGGGCCAAGAGGCCCAGAGACTGCAGCAAGCACCCGGTGTACCACGGCGTACGGAAGCGCAATTGGGGCAAATGGGTCTCGGAAATCCGCGAACCGCGCAAGAAGTCCCGCATCTGGCTCGGAACCTTCGCCACCCCCGAAATGGCGGCGCGGGCCCATGACGTGGCGGCGCTCACCATCAAGGGCCAATCCGCAATCCTCAACTTCCCGGAGATCGCGGACCTGCTCCCCCGCCCCCTCACGTGCTCCCCACGCGACATTCAAGCCGCCGCCACCGCCGCCGCCTCCATGTCTAAATTCGACCCCGTAACACAAACCTCGGACTCAGAAACGGAAACCTCCCAAGAATCCGAACTGAGCGAGATAGTGGAGCTTCCGAACATCGAAGACAGCTTTGACTCCTCCGTTGACTCGTTCGTGATGGTCGACGTTGTGGAGAGTTGGATGTTTCCGCCATTGGACTCCTTCTGCGCGGCCTTTTCCGATGAGTTATTTCCGCAACAGTTTTGCTCCGAAACGCTATTACCCATTTGGGATTGA 621 0.5894 MTQTPTSSETTSSTSSPSTHSGSKAQARAKRPRDCSKHPVYHGVRKRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALTIKGQSAILNFPEIADLLPRPLTCSPRDIQAAATAAASMSKFDPVTQTSDSETETSQESELSEIVELPNIEDSFDSSVDSFVMVDVVESWMFPPLDSFCAAFSDELFPQQFCSETLLPIWD 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02634 206 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Viun10g02634 206 Gene3D AP2/ERF domain 40 99 IPR036955 GO:0003700|GO:0006355
Viun10g02634 206 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Viun10g02634 206 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Viun10g02634 206 FunFam Ethylene-responsive transcription factor 2 39 98 - -
Viun10g02634 206 SUPERFAMILY DNA-binding domain 40 97 IPR016177 GO:0003677
Viun10g02634 206 MobiDBLite consensus disorder prediction 1 41 - -
Viun10g02634 206 MobiDBLite consensus disorder prediction 125 146 - -
Viun10g02634 206 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 158 - -
Viun10g02634 206 MobiDBLite consensus disorder prediction 27 41 - -
Viun10g02634 206 MobiDBLite consensus disorder prediction 1 25 - -
Viun10g02634 206 Pfam AP2 domain 39 89 IPR001471 GO:0003700|GO:0006355
Viun10g02634 206 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Viun10g02634 206 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02634 Viun-Chr10 39859630 39860877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02634 24 179 AP2-EREBP Transcription Factor Family AT5G11590 53.804 1.19e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun10g02634 AP2 4.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02634 - K09286 gmx:100801780 288.5