Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02630 ATGGAAGCGCCGGAATACTTCGTCGGAGGCTATTTTGCCACCGGAGGAGCTGACCAATTCTCTCAGCCGGAGAAGCGCCACGCAGACCAGAAAATCGGTGAGCCTTTCGCCATTGACGACCTCCTCGACTTCTCCCACGCCGACGCCATTATGTCCGACGGTTTCTTCGACAATGTAGCCGGGAACTCCACCGACTCCTCCACCGTCACTGCTGTTGACAGCTGCAACTCCTCAATTTCCGGCAGCGACAACCGCTTCGCAGCAGCCATTGTCCCTCGCGGATACGCCGGCGATCCTCAATTCTCCGGAGAACTCTGCGTTCCGTACGATGATATGGCGGAGCTGGAATGGCTCTCGAACTTCGTCGAGGACTCGTTCTCCGCCGAGGAGGAGTTGAAAACGCTGCAGCTACTTTCCGGCGGCGCTGCGTCCACTGCCATTGGCGCGAAACCGCAGACGCCAGAGTCCTCATCCTCCACCGACACGCTGCCGCCGTTCGCTTCCGACGAAACCGCTCGAAACGCACCTTTTCTCCACACGGAGACGCCTCTCCCGGGGAAGGCGCGCAGCAAGCGCTCACGCGCAGCGCCGGGGGACTGGTCCACACGCCTGCTTCACCTAGTGGCGCCGGAGCAAGAGAGGCTGCCGCAGACGAAGGCTTCACCGGTGAAGAAGAGAGAGGGAACGAATGCGGAGTGTTCCGGAAGGAAATGCCTGCACTGCGGCGCGGAGAAGACGCCGCAGTGGCGGACGGGACCGATGGGACCGAAGACGCTGTGCAACGCGTGCGGCGTGAGGTTCAAGTCCGGGCGGCTGGTTCCAGAGTACCGGCCGGCGGCGAGCCCGACATTCGTGTCGACGAAGCATTCGAATTCGCATCGGAAGGTTTTGGAGCTGAGGCGGCAGAAGGAGATGCATCGACAGCAGCATCAGCAATTGATGAGTCAGAGTTCAATTTTCGGCGTATCCAACGGTGGAGACGAGTTCTTGATCCATCATCATCACCATCAGCACTGTGGGCCAGATTTTAGACACGTTATTTAG 1044 0.5977 MEAPEYFVGGYFATGGADQFSQPEKRHADQKIGEPFAIDDLLDFSHADAIMSDGFFDNVAGNSTDSSTVTAVDSCNSSISGSDNRFAAAIVPRGYAGDPQFSGELCVPYDDMAELEWLSNFVEDSFSAEEELKTLQLLSGGAASTAIGAKPQTPESSSSTDTLPPFASDETARNAPFLHTETPLPGKARSKRSRAAPGDWSTRLLHLVAPEQERLPQTKASPVKKREGTNAECSGRKCLHCGAEKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVSTKHSNSHRKVLELRRQKEMHRQQHQQLMSQSSIFGVSNGGDEFLIHHHHHQHCGPDFRHVI 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02630 347 Pfam GATA zinc finger 238 271 IPR000679 GO:0006355|GO:0043565
Viun10g02630 347 Gene3D - 233 317 IPR013088 GO:0006355|GO:0008270
Viun10g02630 347 FunFam GATA transcription factor 213 313 - -
Viun10g02630 347 MobiDBLite consensus disorder prediction 149 167 - -
Viun10g02630 347 MobiDBLite consensus disorder prediction 146 199 - -
Viun10g02630 347 PIRSF Txn_fac_GATA_plant 20 324 IPR016679 GO:0003677|GO:0005634|GO:0045893
Viun10g02630 347 ProSitePatterns GATA-type zinc finger domain. 238 263 IPR000679 GO:0006355|GO:0043565
Viun10g02630 347 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 235 295 - -
Viun10g02630 347 Coils Coil 296 316 - -
Viun10g02630 347 CDD ZnF_GATA 237 284 IPR000679 GO:0006355|GO:0043565
Viun10g02630 347 PANTHER GATA TRANSCRIPTION FACTOR 33 311 - -
Viun10g02630 347 ProSiteProfiles GATA-type zinc finger domain profile. 232 268 IPR000679 GO:0006355|GO:0043565
Viun10g02630 347 SMART GATA_3 232 282 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02630 Viun-Chr10 39834774 39836428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02630 34 347 C2C2-Gata Transcription Factor Family AT4G32890 46.933 1.23e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun10g02630 GATA 4.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02630 - - gmx:100776605 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02630 10 39834774 39836428 Viun10g02630 10 39834774 39836428 ECH