Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02629 ATGTCCTGCAAGGATGGTAGCAAAAACAACGGAATGGATAACGGGAAGTATGTCCGTTACACACCTGAGCAGGTTGAAGCCTTGGAGAGGCTCTATCATGATTGTCCCAAACCAAGTTCCATTCGCCGCCAGCAACTCATACGCGAGTGCCCCATTCTCTCCAACATTGAGCCCAAACAAATCAAGGTTTGGTTCCAGAATAGAAGATGTAGAGAGAAGCAGAGAAAGGAGTCGTCGCGGCTGCAAGCTGTAAATAGGAAGTTGACTGCAATGAATAAGCTGCTGATGGAAGAGAACGATAGGTTGCAGAAGCAGGTGTCTCAACTGGTGTATGAAAATGGTTATTTTCGTCAACACACTCAAAATACTACACAGGCAACCAAAGACACAAGTTGTGAATCAGCGGTGACGAGTGGTCAGCACAGTTTGACAACTCAACATCCCCCACGAGATGCGAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAATTTCTTTCTAAGGCTACTGGGACTGCTGTAGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCTCTGGTGTGGCAGCACGAGCCTGTGGTCTAGTGGGACTAGAGCCCACTAGGGTTGCCGAAATCCTCAAAGATCGGCCTTTGTGGTATCGCGATTGCCGAGCTGTTGATGTTCTCAATGTGCTGCCCACAGCAAATGGTGGAACCATTGAACTGCTTTATATGCAGCTATATGCACCAACCACATTAGCACCTGCCCGAGATTTCTGGTTGTTGCGTTATACTTCTGTTTTAGAGGATGGAAGTCTAGTGATCTGTGAGAGGTCCCTTAAAAATACTCAAAATGGTCCAAGCATGCCTCCTGTGCAACATTTTGCTAGGGCAGAGATGCTGCCTAGTGGGTACCTAATCAGACCTTGTGAAGGAGGTGGTTCCATCATCCATATTGTTGATCATTTGGATTTAGAGCCATGGAGTGTACCAGAAGTGCTACGGCCACTGTACGAATCATCAACAGTTCTGGCTCAGAAGACAACTATGGCGGCCCTACGTCATCTAAGGCAGATCTCACATGAAGTTTCTCAGTCCAACGTCACTGGGTGGGGTAGACGACCTGCAGCTCTGCGAGCACTTAGCCAAAGATTGAGCCGGGGTTTCAATGAGGCACTCAATGGGTTTACTGATGAGGGATGGACAACAATTGGCAATGATGGTGTAGATGACGTTACTATTCTAGTGAATTCATCCCCTGACAAATTAATGGGTCTGAATCTTCCCTTTGCCAACGGATTTCCGTCTGTCAGTAATGCAGTGCTATGTGCCAAAGCATCCATGCTATTACAGAATGTGCCCCCTGCCATTCTCTTAAGGTTCCTGCGGGAGCATAGATCGGAATGGGCAGACAACAACATGGATGCTTACACAGCTGCTGCTATTAAAGTTGGTCCTTGCAGCTTATCAGGATCTCGTGTTGGAAATTATGGAGGTCAAGTTATACTCCCTTTAGCACACACAATTGAGCATGAAGAGTTTTTGGAAGTCATTAAATTGGAAGGAGTTGCTCATTCTCCCGAAGACACAATAATGCCCAGAGAAATGTTTCTCTTGCAACTCTGCAGTGGAATGGATGAGAACGCTGTGGGCACCTGTGCTGAACTTATATCTGCTCCAATTGATGCTTCTTTTGCTGATGATGCCCCTCTTCTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGGAAGCTTCCAGCCCCAATCGCACCCTTGACCTTGCATCTGCCCTTGACATTGGCCCTAGTGGAAACCGAGCCTCGAATGAAAGTGCTGGAAATTCGGGCTGTATGAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAAGCCATATGCAAGAGCATGTAGCATCTATGGCTCGCCAATATGTTCGGAGCATTATATCATCAGTCCAAAGGGTAGCATTAGCACTTTCTCCTTCTCATTTGAGTTCACATGCAGGACTCCGGTCACCATTGGGCACCCCTGAAGCCCAAACCCTTGCTCACTGGATCTGCAATAGTTACAGGTGCTACTTGGGTGTGGAGTTACTCAAGTCTAACAACGAGGGGAATGAATCTTTGCTGAAGTCCCTGTGGCATCACTCGGATACAATATTGTGCTGCACTCTGAAGGCATTGCCAGTGTTCACTTTCTCGAACCAAGCTGGGCTTGACATGCTGGAGACCACCCTAGTTGCATTACAAGATATATCGTTGGAGAAAATATTCGATGATCATGGACGAAAAATTCTCTTTTCAGAGTTTCCCCAGATTATTCAACAGGGCTTTGCATGCCTTCAAGGTGGTATTTGTCTTTCAAGCATGGGGCGACCCGTCTCATACGAGAGAGTTGTTGCTTGGAAGGTACTGAATGAAGAAGAAAATGCTCACTGTATTTGCTTTATGTTTATGAACTGGTCTTTTGTTTGA 2514 0.4642 MSCKDGSKNNGMDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNTTQATKDTSCESAVTSGQHSLTTQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCSGVAARACGLVGLEPTRVAEILKDRPLWYRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFARAEMLPSGYLIRPCEGGGSIIHIVDHLDLEPWSVPEVLRPLYESSTVLAQKTTMAALRHLRQISHEVSQSNVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWTTIGNDGVDDVTILVNSSPDKLMGLNLPFANGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYTAAAIKVGPCSLSGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGVAHSPEDTIMPREMFLLQLCSGMDENAVGTCAELISAPIDASFADDAPLLPSGFRIIPLESGKEASSPNRTLDLASALDIGPSGNRASNESAGNSGCMRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHAGLRSPLGTPEAQTLAHWICNSYRCYLGVELLKSNNEGNESLLKSLWHHSDTILCCTLKALPVFTFSNQAGLDMLETTLVALQDISLEKIFDDHGRKILFSEFPQIIQQGFACLQGGICLSSMGRPVSYERVVAWKVLNEEENAHCICFMFMNWSFV 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02629 837 CDD bZIP 68 107 - -
Viun10g02629 837 Gene3D - 194 378 IPR023393 -
Viun10g02629 837 SMART START_1 159 369 IPR002913 GO:0008289
Viun10g02629 837 MobiDBLite consensus disorder prediction 121 149 - -
Viun10g02629 837 SUPERFAMILY Bet v1-like 396 595 - -
Viun10g02629 837 Gene3D - 8 82 - -
Viun10g02629 837 SUPERFAMILY Bet v1-like 159 369 - -
Viun10g02629 837 Pfam MEKHLA domain 694 836 IPR013978 -
Viun10g02629 837 Pfam START domain 160 368 IPR002913 GO:0008289
Viun10g02629 837 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Viun10g02629 837 FunFam homeobox-leucine zipper protein ATHB-15 195 376 - -
Viun10g02629 837 Coils Coil 81 112 - -
Viun10g02629 837 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 837 IPR044830 GO:0003700
Viun10g02629 837 CDD START_ArGLABRA2_like 154 369 - -
Viun10g02629 837 FunFam Homeobox-leucine zipper protein REVOLUTA 16 71 - -
Viun10g02629 837 ProSiteProfiles START domain profile. 150 364 IPR002913 GO:0008289
Viun10g02629 837 Pfam Homeodomain 16 74 IPR001356 GO:0003677
Viun10g02629 837 CDD homeodomain 16 76 IPR001356 GO:0003677
Viun10g02629 837 SUPERFAMILY Homeodomain-like 15 77 IPR009057 -
Viun10g02629 837 SMART HOX_1 13 79 IPR001356 GO:0003677
Viun10g02629 837 MobiDBLite consensus disorder prediction 121 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02629 Viun-Chr10 39820452 39828345 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02629 1 789 Homeobox Transcription Factor Family AT1G52150 85.082 0.0 1399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun10g02629 START 6e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02629 K09338 - gmx:100800165 1636.7