Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02618 ATGTTCTCCTCCAATGCATGCTCCTTCATGTGCAAGTCGGGCATAGGTGGGTGGTCTTCGTGCAGTAACTTCTCTGCTTCACGGAGGAGGCGTTCTGCTCCATCGAGAGTCACGTGTTGCGCTCCAACTTCGACCAGCGGCAAAACTCACGGCGGCTCTGTGATGGCTAAAGAGGCAAATGGGACTTCCACGGCGGTCGGCGAAACCCCAATCACTGGCGGCGGCGTCCGGGACGTGTACGGCGAGGATAAGGCCACGGAGGATCAGTTTGTGACTCCATGGAGTGTCTCTGTTTCAAGTGGGTATACTTTGTTGAGAGATCCACACTTCAACAAAGGACTCGCCTTCACCGAAGAAGAGAGGGAAACCCACTTCTTGCGTGGCCTTCTTCCCCCATCTGTTATTTCTCAAGAAACTCAGGTAAAAAAAATGATCCAACACATACGCCAGTATCAAGTTCCATTGCAGAAGTACGTGGCAATGATGGATCTGCAGTTATTTGCTGGGTTGCAGGGGAGAAATGAAAGATTGTTCTACAAGCTTCTGCTTGATCATGTTGAGGAGTTACTACCAGTTGTCTATACTCCAACAGTTGGCGAAGCATGCCAGAAATATGGGAGTATCTTCATGCATCCTCAGGGACTTTATATAAGTTTGAGGGAGAAAGGGAGGATTCTTGAAGTACTAAGGAATTGGCCTGAGAAGAACATTCAAGTCATTGTTGTGACTGATGGAGAGAGAATTCTGGGTCTTGGGGATCTTGGCTGTCAGGGAATGGGAATACCGGTAGGAAAACTTTCTCTATATTCAGCACTTGGTGGAGTTCGTCCTTCTGCTTGCTTACCTATTACCATCGATGTGGGTACAAACAATGAGAAGTTGTTGAATGAAGAATTATATATAGGGCTCAAGCATAAACGAGCAACTGGGCAGGAATATGCTGAACTTCTACACGAATTTATGATTGCAGTCAAGCAGAATTATGGTGAAAAAGTCCTTATTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGTTCTACTTGAAAAATACAGGTCAACACATCTTGTCTTTAATGATGATATTCAGGGAACAGCAGCAGTTGTTCTTGCAGGACTAGTTGCAGCTCTGAAATTGGTTGGGGGAAACTTGACTGATCACAGGTTCTTATTCCTTGGTGCTGGAGAGGCTGGCACTGGAATAGCAGAACTCATAGCACTTGAAACTTCAAAAAGGACAAATGTCCCAGTAGAAGAATTGCGCAAGAACATTTGGTTGGTGGACTCAAAGGGGTTGATTGTGAGATCCCGCAAAGACTCACTTCAACATTTTAAGAGACCCTGGGCTCATGAACATGAACCTGTTCAGAAACTTGTAGATGCTATTAATAAAATCAAGCCAACGGTTTTAATCGGAACATCAGGACAAGGGAGAGCTTTTACCAAGGAAGTGATTGAAGCTATGGCTTCCATTAATGCGAAACCTATTATTCTTGCCCTTTCCAACCCAACATCACAGTCAGAATGCACTGCTGAAGAAGCTTACACTTGGAGCAAGGGACGTGCCATTTTTGCTAGTGGAAGCCCTTTTGGCCCAGTTGAATATGGTGGAAAAGTGTTTGTGCCTGGCCAGGCCAATAATGCATACATTTTCCCTGGATTTGGTCTTGGTTTGATAATGTCTGGAACCATTCGTGTGCATGATGACCTTCTTCTGGCAGCTGCTGAAGCTTTGGCTTCACAGGTGACTCAAGAGGACTATAATAAGGGACTCATATACCCTCCATTCAGAAACATCAGAAAGATTTCAGCACACATAGCAGCCAAGGTGGCTGCTAAGGCCTATGAGCTTGGCTTGGCTAGTAACCTTCCTCAACCAAAAGATATGGTGAAGTTTGCTGAGAACTCTATGTATTCACCGGCCTATAGAAACTACCGGTGA 1941 0.4529 MFSSNACSFMCKSGIGGWSSCSNFSASRRRRSAPSRVTCCAPTSTSGKTHGGSVMAKEANGTSTAVGETPITGGGVRDVYGEDKATEDQFVTPWSVSVSSGYTLLRDPHFNKGLAFTEEERETHFLRGLLPPSVISQETQVKKMIQHIRQYQVPLQKYVAMMDLQLFAGLQGRNERLFYKLLLDHVEELLPVVYTPTVGEACQKYGSIFMHPQGLYISLREKGRILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYSALGGVRPSACLPITIDVGTNNEKLLNEELYIGLKHKRATGQEYAELLHEFMIAVKQNYGEKVLIQFEDFANHNAFVLLEKYRSTHLVFNDDIQGTAAVVLAGLVAALKLVGGNLTDHRFLFLGAGEAGTGIAELIALETSKRTNVPVEELRKNIWLVDSKGLIVRSRKDSLQHFKRPWAHEHEPVQKLVDAINKIKPTVLIGTSGQGRAFTKEVIEAMASINAKPIILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFGPVEYGGKVFVPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAAAEALASQVTQEDYNKGLIYPPFRNIRKISAHIAAKVAAKAYELGLASNLPQPKDMVKFAENSMYSPAYRNYR 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02618 646 PRINTS Malic enzyme signature 389 405 IPR001891 GO:0004470|GO:0004471
Viun10g02618 646 PRINTS Malic enzyme signature 177 201 IPR001891 GO:0004470|GO:0004471
Viun10g02618 646 PRINTS Malic enzyme signature 273 295 IPR001891 GO:0004470|GO:0004471
Viun10g02618 646 PRINTS Malic enzyme signature 237 266 IPR001891 GO:0004470|GO:0004471
Viun10g02618 646 PRINTS Malic enzyme signature 358 374 IPR001891 GO:0004470|GO:0004471
Viun10g02618 646 PRINTS Malic enzyme signature 492 508 IPR001891 GO:0004470|GO:0004471
Viun10g02618 646 PRINTS Malic enzyme signature 333 351 IPR001891 GO:0004470|GO:0004471
Viun10g02618 646 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 362 645 IPR036291 -
Viun10g02618 646 CDD NAD_bind_1_malic_enz 362 640 - -
Viun10g02618 646 Gene3D - 99 359 IPR037062 GO:0004471
Viun10g02618 646 Gene3D - 360 646 - -
Viun10g02618 646 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 79 361 IPR046346 -
Viun10g02618 646 PANTHER MALIC ENZYME-RELATED 71 645 - -
Viun10g02618 646 ProSitePatterns Malic enzymes signature. 358 374 IPR015884 GO:0004471
Viun10g02618 646 SMART malic_2 171 352 IPR012301 GO:0004471
Viun10g02618 646 FunFam Malic enzyme 99 359 - -
Viun10g02618 646 PIRSF ME 63 646 IPR001891 GO:0004470|GO:0004471
Viun10g02618 646 Pfam Malic enzyme, NAD binding domain 362 614 IPR012302 GO:0051287
Viun10g02618 646 Pfam Malic enzyme, N-terminal domain 171 352 IPR012301 GO:0004471
Viun10g02618 646 SMART Malic_M_2 362 615 IPR012302 GO:0051287
Viun10g02618 646 FunFam Malic enzyme 360 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02618 Viun-Chr10 39752376 39757458 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02618 K00029 - gmx:100785718 1056.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02618 10 39752376 39757458 Viun10g02618 10 39752376 39757458 ECH
Viun10g02618 10 39752376 39757458 Viun5g03858 5 47025313 47030587 ECH
Viun3g00317 3 1848041 1853141 Viun10g02618 10 39752376 39757458 ECH
Viun9g02784 9 36517868 36522389 Viun10g02618 10 39752376 39757458 ECH
Viun10g02618 10 39752376 39757458 Viun9g02784 9 36517868 36522389 ECH
Viun10g02618 10 39752376 39757458 Viun4g02032 4 36094580 36096592 ECH
Viun10g02618 10 39752376 39757458 Viun7g03187 7 34412245 34414573 ECH
Viun10g02618 10 39752376 39757458 Viun10g01982 10 34532272 34534076 ECH
Viun10g02618 10 39752376 39757458 Viun5g00823 5 5184180 5186153 ECH
Viun5g03858 5 47025313 47030587 Viun10g02618 10 39752376 39757458 PCT