Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02613 ATGATGATTCTCGTGAGAAAACCCCATTGGGGGTTGCTTCTCTTTCTTCTCCACCTTCACTTCAGCACCTGTTACTCCACAGAACCTATGAACTGTACGGACACAAGCCGCGTTTGCACTTCTTTCATGGCCTTCAAGCCTGAGCCAAACCAAACGCTTGCTGTGATTCAGAGCATGTTTGATGTGTTGCCGGGTGACATCACAGTTGAAGGCAACGGGTGGGGTTACATGTTCATAAGGAAGAACTGTTCTTGTGCTGCGGGTATCAAGAAATACTTGTCCAATACCACCTTCACTGTGAAATCCAATGAGGGGTTGGTGTATGACGTGGTGATGAATGCCTATGACGGCCTTGCTGTCCTTCCCAACACCACCAGGAGGGCCAGGAATGGTGCTGTTGTGTCTCTGAGGTTGTTTTGTGGCTGCTCCAGTGGACTGTGGAACTATTTGGTCAGTTATGTGATGAGAGATGGGGATAGTATTGAGTCCTTGGCAAGCAGGTTTGGGGTTAGCATGGATAGCATTGAGAGTGTCAATGGCATTAGTAATCTGGATAATGTCACAGTTGGTTCACTTTATTACATACCACTTGATTCTGTTCCTGGTGATCCTTATCCCCTAAATAATGCTGCTCCACCAGTTCCTGTTCCCGCTCCATCCTTTGATAATTTTTCAGCTGATCAAGTCAACCACAATGCTCATGTACCTTTAGGATGGATCATTGGGGGCTTAGGAGTTGGTGTGATTCTAATTGGATTATTAGTTGTGATTCTCTGTGTTTGTATGAGATCATCAAATTGTTTTGCTGATGATGCCAGAACTCATGAGAAAGATGCCGAGGGCAAAATTTCTCATAAATTCCACATTCTAAGGAACCCAAGTTTTTTTTGTGGTTCTGGAAGGTACATATGTGGCAAGCATGTTGAACATAAGCAAACAGATGCTGAATCCAGCAATCACACGATTACCATTCCAAAAGTCTCAACTCTTGGGCCTGATGTATTTGAAATGGACAAGCCAGTTGTCTTTACATATGAAGAGATTTTCTCCACATCTGATGGTTTCTCTGATTCAAATCTACTTGGTCATGGAACATACGGTTCTGTTTATTATAGCCTCCTTCGTGATCAGGAAGTTGCTATTAAAAGAATGACTGCTACTAAAACAAAAGAATTTTTGTCAGAAATGAAAGTTTTGTGCAAGGTTCATCATGCCAATCTGGTAGAGTTGATTGGCTATGCAGCTAGTCAAGAGGAGCTTTTCCTAGTTTATGAATATGCTCAGAAGGGTTCACTTAGAAGCCATTTGCATGATCCTCAAAGTAAGGGTCATTCCCCACTTTCTTGGATCATGAGGGTTCAAATTGCACTTGATGCTGCCAGAGGCCTTGAATACATACACGAGCACACAAAAACTCATTATGTACACCGTGATATCAAGACCAGTAACATATTACTTGATGCTTCCTTTAGAGCAAAGATTTCAGATTTTGGGTTAGCAAAACTTGTTGGGAAAGCAAATGAGGGAGAAATTTCAACTACCAAAGTTGTTGGTACATATGGATATCTTGCCCCAGAATATTTGAGTGAGGGTCTTGCGACAACTAAAAGTGATATCTATGCATTTGGTGTTGTCCTTTTTGAGATTATATCAGGAAAGGAGGCCATCATTCGACCAGAAGGCACAACAACAAAAAATCCTGAAAGACGTTCATTGGCATCCATAATGCTGGGAGTTCTTAGGAATTCACCTGACTCCATGAGCATGTCAAGCTTGAGAGATTACATTGATCCAAATATGATGGATTTGTATCCCCATGATTGTGTATTTAAGATGGCTACACTGGCAAAGCAATGTGTGGATGAGGACCCCATCTTACGACCTGATATGAGACAAGTTGTGATTTCACTCTCACAGATTCTTCTGTCTTCTGTTGAGTGGGAAGCAACTCTAGCTGGAAATAGCCAGGTTTTCAGTGGCCTTGTTCAGGGAAGATAG 1998 0.4229 MMILVRKPHWGLLLFLLHLHFSTCYSTEPMNCTDTSRVCTSFMAFKPEPNQTLAVIQSMFDVLPGDITVEGNGWGYMFIRKNCSCAAGIKKYLSNTTFTVKSNEGLVYDVVMNAYDGLAVLPNTTRRARNGAVVSLRLFCGCSSGLWNYLVSYVMRDGDSIESLASRFGVSMDSIESVNGISNLDNVTVGSLYYIPLDSVPGDPYPLNNAAPPVPVPAPSFDNFSADQVNHNAHVPLGWIIGGLGVGVILIGLLVVILCVCMRSSNCFADDARTHEKDAEGKISHKFHILRNPSFFCGSGRYICGKHVEHKQTDAESSNHTITIPKVSTLGPDVFEMDKPVVFTYEEIFSTSDGFSDSNLLGHGTYGSVYYSLLRDQEVAIKRMTATKTKEFLSEMKVLCKVHHANLVELIGYAASQEELFLVYEYAQKGSLRSHLHDPQSKGHSPLSWIMRVQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDASFRAKISDFGLAKLVGKANEGEISTTKVVGTYGYLAPEYLSEGLATTKSDIYAFGVVLFEIISGKEAIIRPEGTTTKNPERRSLASIMLGVLRNSPDSMSMSSLRDYIDPNMMDLYPHDCVFKMATLAKQCVDEDPILRPDMRQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02613 665 Gene3D Transferase(Phosphotransferase) domain 1 428 652 - -
Viun10g02613 665 FunFam PTI1-like tyrosine-protein kinase 3 427 651 - -
Viun10g02613 665 FunFam Kinase family protein 330 426 - -
Viun10g02613 665 Pfam LysM domain 153 190 IPR018392 -
Viun10g02613 665 SUPERFAMILY Protein kinase-like (PK-like) 332 637 IPR011009 -
Viun10g02613 665 Gene3D LysM domain 148 201 IPR036779 -
Viun10g02613 665 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 50 659 IPR044812 GO:0019199|GO:0045087
Viun10g02613 665 ProSitePatterns Protein kinases ATP-binding region signature. 361 382 IPR017441 GO:0005524
Viun10g02613 665 ProSiteProfiles Protein kinase domain profile. 355 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g02613 665 Pfam Protein tyrosine and serine/threonine kinase 359 635 IPR001245 GO:0004672|GO:0006468
Viun10g02613 665 SMART LysM_2 152 196 IPR018392 -
Viun10g02613 665 ProSiteProfiles LysM domain profile. 151 195 IPR018392 -
Viun10g02613 665 Gene3D Phosphorylase Kinase; domain 1 330 426 - -
Viun10g02613 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Viun10g02613 665 SMART serkin_6 355 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g02613 665 SUPERFAMILY LysM domain 151 196 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02613 Viun-Chr10 39727264 39733144 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02613 28 665 Receptor kinase-like Gene Family AT1G51940 69.350 0.0 871
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Viun10g02613 PK_Tyr_Ser-Thr 9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02613 - - gmx:100796989 1196.42