Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02610 ATGTGGCAAAGAAGCCACGGGTCTTCAGAGGAGAGGAAACTGGAGCTTAGGCTTGGTCCACCTAGCGAAGAGTCTTTCGATGAAAGCATCAAAAAATACATCACAGAAAGAAACGAATCACCGCTCACTCTTGGTTACTTTTCACCTCATGAAATTTTCACTTCTGACAAACCAGGTCCAGGTGGGGTTATGGTGCCCAATGCATGGAGTTACCAACACCAGGCTAAACCAAATGTTTCATCATTTTTTCAACTCCAATCAAGGTCACAAAACTTGTTAATGATGAGAAAGGAAGTGTCACAACAACTTTGTTGTGTAGAGAACAAGGCATTCTCACCCTCTTATGCAGAAGCGACCGTATGCACAAGAACTGTTTCGGATCCAGTAGTGGGTTGGCCTCCAATTCGTTCCTTCAGGAAGAACATTGCAAGTGGAAGCTCTTCAAAGCTGCCTACTGGGTCCCAACAATATCAACATTTTGTTCCAGACAACGTTGCTAGCAAACAACCTACTTACAACTGTGGCAAAGGCTTGTTTGTGAAGATCAATATGGATGGTGTTCCTATAGGAAGAAAACTGAACATTAATGCTTATGACAGCTATGAAAAACTTTCCTCTGGTGTTGATGAGCTCTTTAGAGGCCTACTTGCAGAGATGAAGTTATCTCATATTGCCTCTTCCCACTGTTTTTCTGCACAAAGAGATTTCATTGCTGGTGGAATTCAAAACAAGGGAGAGGAAGAGAAAGAGAAAGGCAACACAGGTTTTCTGGTTGGAAGTGGAGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAAAATGCTTGTTGGAGATGTACCTTGGCACATGTTCGTGTCGACAGTGAAGAGGCTGAGGGTGTTGAAGAGTTCTGATCTTCCTGCATTTGCATTTAGAAATAAGCAAGACTAG 933 0.4244 MWQRSHGSSEERKLELRLGPPSEESFDESIKKYITERNESPLTLGYFSPHEIFTSDKPGPGGVMVPNAWSYQHQAKPNVSSFFQLQSRSQNLLMMRKEVSQQLCCVENKAFSPSYAEATVCTRTVSDPVVGWPPIRSFRKNIASGSSSKLPTGSQQYQHFVPDNVASKQPTYNCGKGLFVKINMDGVPIGRKLNINAYDSYEKLSSGVDELFRGLLAEMKLSHIASSHCFSAQRDFIAGGIQNKGEEEKEKGNTGFLVGSGEYTLVYEDNEGDKMLVGDVPWHMFVSTVKRLRVLKSSDLPAFAFRNKQD 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02610 310 Pfam AUX/IAA family 14 304 IPR033389 -
Viun10g02610 310 SUPERFAMILY CAD & PB1 domains 167 294 - -
Viun10g02610 310 Gene3D - 173 308 - -
Viun10g02610 310 MobiDBLite consensus disorder prediction 1 25 - -
Viun10g02610 310 ProSiteProfiles PB1 domain profile. 177 297 IPR000270 GO:0005515
Viun10g02610 310 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 299 IPR003311 GO:0005634|GO:0006355
Viun10g02610 310 FunFam Auxin-responsive protein 172 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02610 Viun-Chr10 39717970 39720973 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02610 189 300 B3 DNA Binding Superfamily AT5G20730 24.107 2.13e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Viun10g02610 AUX_IAA 8.1e-61 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02610 K14484 - gmx:100793822 428.328