Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02609 ATGTGGCAAAGAAGCCACGGGTCTTCAGAGGAGAGGAAACTGGAGCTTAGGCTTGGTCCACCTAGCGAAGAGTCTTTCGATGAAAGCATCAAAAAATACATCACAGAAAGAAACGAATCACCGCTCACTCTTGGTTACTTTTCACCTCATGAAATTTTCACTTCTGACAAACCAGGTCCAGGTGGGGTTATGGTGCCCAATGCATGGAGTTACCAACACCAGGCTAAACCAAATGTTTCATCATTTTTTCAACTCCAATCAAGGTCACAAAACTTGTTAATGATGAGAAAGGAAGTGTCACAACAACTTTGTTGTGTAGAGAACAAGGCATTCTCACCCTCTTATGCAGAAGCGACCGTATGCACAAGCAGAACTGTTTCGGATCCAGTAGTGGGTTGGCCTCCAATTCGTTCCTTCAGGAAGAACATTGCAAGTGGAAGCTCTTCAAAGCTGCCTACTGGGTCCCAACAATATCAACATTTTGTTCCAGACAACGTTGCTAGCAAACAACCTACTTACAACTGTGGCAAAGGCTTGTTTGTGAAGATCAATATGGATGGTGTTCCTATAGGAAGAAAACTGAACATTAATGCTTATGACAGCTATGAAAAACTTTCCTCTGGTGTTGATGAGCTCTTTAGAGGCCTACTTGCAGAGATGAAGTTATCTCATATTGCCTCTTCCCACTGTTTTTCTGCACAAAGAGATTTCATTGCTGGTGGAATTCAAAACAAGGGAGAGGAAGAGAAAGAGAAAGGCAACACAGGTTTTCTGGTTGGAAGTGGAGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAAAATGCTTGTTGGAGATGTACCTTGGCACATGTTCGTGTCGACAGTGAAGAGGCTGAGGGTGTTGAAGAGTTCTGATCTTCCTGCATTTGCATTTAGAAATAAGCAAGACTAG 936 0.4252 MWQRSHGSSEERKLELRLGPPSEESFDESIKKYITERNESPLTLGYFSPHEIFTSDKPGPGGVMVPNAWSYQHQAKPNVSSFFQLQSRSQNLLMMRKEVSQQLCCVENKAFSPSYAEATVCTSRTVSDPVVGWPPIRSFRKNIASGSSSKLPTGSQQYQHFVPDNVASKQPTYNCGKGLFVKINMDGVPIGRKLNINAYDSYEKLSSGVDELFRGLLAEMKLSHIASSHCFSAQRDFIAGGIQNKGEEEKEKGNTGFLVGSGEYTLVYEDNEGDKMLVGDVPWHMFVSTVKRLRVLKSSDLPAFAFRNKQD 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02609 311 FunFam Auxin-responsive protein 173 309 - -
Viun10g02609 311 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 300 IPR003311 GO:0005634|GO:0006355
Viun10g02609 311 ProSiteProfiles PB1 domain profile. 178 298 IPR000270 GO:0005515
Viun10g02609 311 SUPERFAMILY CAD & PB1 domains 168 295 - -
Viun10g02609 311 Gene3D - 174 309 - -
Viun10g02609 311 MobiDBLite consensus disorder prediction 1 25 - -
Viun10g02609 311 Pfam AUX/IAA family 14 305 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02609 Viun-Chr10 39717970 39720973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02609 190 301 B3 DNA Binding Superfamily AT5G20730 24.107 2.14e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Viun10g02609 AUX_IAA 7e-61 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02609 K14484 - gmx:100793822 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02609 10 39717970 39720973 Viun5g03850 5 46952622 46957155 ECH
Viun10g02609 10 39717970 39720973 Viun10g02609 10 39717970 39720973 ECH
Viun5g03850 5 46952622 46957155 Viun10g02609 10 39717970 39720973 PCT