Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02603 ATGGGAAAAGCTAGCAGGTGGTTCAAGGGTTTGTTGGGGATGAAGAAGGAGAAGGACCACAGCGACAATTCAGGCTCGCTGGCTCCTGACAAGAAGGAGAAGAAAAGGTGGAGTTTTGCTAAGCCAGGGAAGGATGCACCATCTTCAGTTCCTGCCACAGATAACACCTGGCTCAGATCCTACATTGCTGATACAGAGAATGAGCAGAATAAACATGCAATTGCCGTTGCCGCTGCCACTGCAGCCGCCGCCGATGCTGCCGTCGCCGCCGCACAGGCTGCCGTGGCGGTTGTCAGGCTCACAAGCCAGGGTAGAGGTGCATTGTTCAGTGGAAGCAGGGAGAAGTGGGCTGCCGTGAAGATCCAAACTTTTTTCAGAGGCTACTTGGCACGGAAGGCTCTTAGAGCACTGAAAGGATTGGTTAAGATACAGGCTCTTGTTCGAGGGTACTTGGTTAGAAAGAGAGCTGCTGCAACTCTTCACAGTATGCAAGCTCTGATAAGAGCTCAAACTGCTGTGAGATCACAGCGAGCTCGTCGTTCTTTGAGCAAAGAAAGCAGATTTCTACCTGAAGTTCTTGCAAGAAAATCTGTGGAACGATTTGATGAAACAAGGAGTGAATCACACAGTAAAAGGCTACCAACATCCTATGAAACATCCTTGAATGGTTTTGATGAGAGTCCCAAGATTGTTGAAATTGACACATACAAGACTCGATCAAGGTCTAGGCGCTTTACCTCTACAATGTCTGAGTGTGGAGAAGACATGTCGTGTCAGGCAATGTCTTCCCCTCTACCTTGTCATGTTCCTGGTCGAATCTCGGTTCCTGATTGCAGACACCTTCAAGATTTTGATTGGTACTTCAATGTCGATGAGTGCAGATTCTCCACTGCTCATAGCACACCACGTTTCACAAACTATGCTCGTCCTAATGCTCCAGCTACACCAGCCAAGAGTGTTTGTGGAGACACTTTCTTCAGACCTTGCTCCAATTTCCCCAACTACATGGCCAATACTCAGTCATTCAAGGCAAAACTAAGGTCTCACAGTGCTCCAAAACAAAGACCTGAACCCAAGAAAAGGCTCTCACTTAATGAGGTTATGGCAGCAAGAAACAGCATAAGTAGTGTTAGAATGCAAAGGCCATCATCCAATTTCTTCCAGACTCAAGAATCCTGGAATTTTTGA 1188 0.4722 MGKASRWFKGLLGMKKEKDHSDNSGSLAPDKKEKKRWSFAKPGKDAPSSVPATDNTWLRSYIADTENEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGALFSGSREKWAAVKIQTFFRGYLARKALRALKGLVKIQALVRGYLVRKRAAATLHSMQALIRAQTAVRSQRARRSLSKESRFLPEVLARKSVERFDETRSESHSKRLPTSYETSLNGFDESPKIVEIDTYKTRSRSRRFTSTMSECGEDMSCQAMSSPLPCHVPGRISVPDCRHLQDFDWYFNVDECRFSTAHSTPRFTNYARPNAPATPAKSVCGDTFFRPCSNFPNYMANTQSFKAKLRSHSAPKQRPEPKKRLSLNEVMAARNSISSVRMQRPSSNFFQTQESWNF 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02603 395 Gene3D - 56 140 - -
Viun10g02603 395 MobiDBLite consensus disorder prediction 1 52 - -
Viun10g02603 395 Pfam IQ calmodulin-binding motif 141 155 IPR000048 GO:0005515
Viun10g02603 395 Pfam IQ calmodulin-binding motif 116 135 IPR000048 GO:0005515
Viun10g02603 395 SMART iq_5 113 135 IPR000048 GO:0005515
Viun10g02603 395 SMART iq_5 136 157 IPR000048 GO:0005515
Viun10g02603 395 ProSiteProfiles IQ motif profile. 114 142 IPR000048 GO:0005515
Viun10g02603 395 Pfam Protein of unknown function (DUF4005) 302 377 IPR025064 -
Viun10g02603 395 ProSiteProfiles IQ motif profile. 138 165 IPR000048 GO:0005515
Viun10g02603 395 PANTHER IQ-DOMAIN 5-RELATED 1 365 - -
Viun10g02603 395 MobiDBLite consensus disorder prediction 10 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02603 Viun-Chr10 39690750 39692806 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02603 1 379 IQD Protein Family AT3G16490 56.489 4.07e-115 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02603 - - gmx:100797686 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02603 10 39690750 39692806 Viun10g02603 10 39690750 39692806 ECH
Viun5g03844 5 46900843 46902784 Viun10g02603 10 39690750 39692806 PCT